View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10985_low_13 (Length: 210)
Name: NF10985_low_13
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 3951483 - 3951310
Alignment:
| Q |
18 |
aggcaattctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
117 |
Q |
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| T |
3951483 |
aggcaactctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
3951384 |
T |
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| Q |
118 |
ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaa |
191 |
Q |
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| T |
3951383 |
ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaa |
3951310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 4027393 - 4027563
Alignment:
| Q |
18 |
aggcaattctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
117 |
Q |
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| T |
4027393 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaa |
4027490 |
T |
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| Q |
118 |
ggaacaaaatg--agtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataa |
189 |
Q |
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| T |
4027491 |
ggaccaaaatgatagtttgctctaatatctgca-aattaatatttagttctattatacaatgatttctacataa |
4027563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 4013094 - 4013193
Alignment:
| Q |
18 |
aggcaattctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
117 |
Q |
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| T |
4013094 |
aggcaattctaagtcattaaaactcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattc-tgactttaa |
4013192 |
T |
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