View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10985_low_2 (Length: 653)

Name: NF10985_low_2
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10985_low_2
NF10985_low_2
[»] chr8 (1 HSPs)
chr8 (18-635)||(9545240-9545857)
[»] chr7 (1 HSPs)
chr7 (302-441)||(40393678-40393817)


Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 9545857 - 9545240
Alignment:
Q  18 caatgaacaccgaaatcggaaagatacagaagcaaatacacgaggcttcgttggaggaaagcgatactcccttgaagaagaagttagacgaatttggtgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545857 caatgaacaccgaaatcggaaagatacagaagcaaatacacgaggcttcgttggaggaaagcgatactcccttgaagaagaagttagacgaatttggtgg 9545758  T
Q  118 caggcttacaacttctattggaatagtttgtcttgttgtttggattataaactacaaaaatttcatatcttgggatgttgttgatggatggcctacaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545757 caggcttacaacttctattggaatagtttgtcttgttgtttggattataaactacaaaaatttcatatcttgggatgttgttgatggatggcctacaaac 9545658  T
Q  218 attcaattttcttttcagaaatgcacttactatttcaaaattgctgttgctcttgctgtggctgcaattccagaaggtcttccggcggttattacaactt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545657 attcaattttcttttcagaaatgcacttactatttcaaaattgctgttgctcttgctgtggctgcaattccagaaggtcttccggcggttattacaactt 9545558  T
Q  318 gtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactgtgatttgttcaga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545557 gtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactgtgatttgttcaga 9545458  T
Q  418 taaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgtagagtcattagtgttgaagggaca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545457 taaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgtagagtcattagtgttgaagggaca 9545358  T
Q  518 acatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcggaaatttgtgctgtttgtaatgatg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9545357 acatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcggaaatttgtgctgtttgtaatgatg 9545258  T
Q  618 ccggtgtttattttgatg 635  Q
    ||||||||||||||||||    
T  9545257 ccggtgtttattttgatg 9545240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 441
Target Start/End: Complemental strand, 40393817 - 40393678
Alignment:
Q  302 gcggttattacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtacca 401  Q
    ||||| ||||| |||||| | |||||||||||  | |||||||| || ||||||||  | || || ||||| ||||||||||||||  |||| || || |    
T  40393817 gcggtcattacgacttgtctcgcacttggtactcgcaaaatggcccagaagaatgccctggttaggaagctaccaagtgttgaaaccctgggttgcacaa 40393718  T
Q  402 ctgtgatttgttcagataaaaccggtacactgactacaaa 441  Q
    ||||||| ||||| |||||||| |||||||||||||||||    
T  40393717 ctgtgatatgttctgataaaactggtacactgactacaaa 40393678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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