View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10985_low_4 (Length: 508)
Name: NF10985_low_4
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 35 - 503
Target Start/End: Original strand, 24377369 - 24377827
Alignment:
| Q |
35 |
tactatagcctataattttatattgcaactaagatcatttgcattgtgagcttcatcgttgctcgttaatttgtctttattattgtagctcaggattttc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24377369 |
tactatagcctataattttatattgcaactaagatcatttgcattgtgagcttcatcgttgctcgttaatttgtctttattattgtagctcaggattttc |
24377468 |
T |
|
| Q |
135 |
tatcatatgcaccaaactcaagcttccattgagttatatatatatgcttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttg |
234 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
24377469 |
tatcatatgcagcaaactcaaacttccattgagt----tatatatgcttggataaagatgaataagcaaaattctctacaaataacgactgcttctgttg |
24377564 |
T |
|
| Q |
235 |
cttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttgaatactaag |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
24377565 |
cttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaa------ttcattttcatatgcatgcatttgaatactaag |
24377658 |
T |
|
| Q |
335 |
gttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagt |
434 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24377659 |
cttttatcctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttatcgggtctggtgttttgtcattggcatggagt |
24377758 |
T |
|
| Q |
435 |
actgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctatgcttct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
24377759 |
actgctcaactaggatggattggagggccacttgcattactttcttgtgcaatagctacctatgtttct |
24377827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 236 - 497
Target Start/End: Original strand, 24400410 - 24400664
Alignment:
| Q |
236 |
ttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttgaatactaagg |
335 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||| || || |||||||||||| |||||||| || | | |||||||||||| | | |
|
|
| T |
24400410 |
ttatgatgatgacggacgtgccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcat------atacttgaatttgaatactgaag |
24400503 |
T |
|
| Q |
336 |
ttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagta |
435 |
Q |
| |
|
|||||||| | | |||||||||||||||| |||| ||||| |||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
24400504 |
ttttattcggg-ataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagta |
24400602 |
T |
|
| Q |
436 |
ctgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctat |
497 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
24400603 |
tttctcaattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
24400664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 489
Target Start/End: Original strand, 24412972 - 24413105
Alignment:
| Q |
356 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
455 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24412972 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24413071 |
T |
|
| Q |
456 |
ggagggccacttgcattgctttcttgtgcaatag |
489 |
Q |
| |
|
||||| ||| || | ||||||| ||||||||||| |
|
|
| T |
24413072 |
ggaggaccagttaccttgctttgttgtgcaatag |
24413105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 489
Target Start/End: Complemental strand, 24421069 - 24420936
Alignment:
| Q |
356 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
455 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24421069 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24420970 |
T |
|
| Q |
456 |
ggagggccacttgcattgctttcttgtgcaatag |
489 |
Q |
| |
|
||||| ||| || | ||||||| ||||||||||| |
|
|
| T |
24420969 |
ggaggaccagttaccttgctttgttgtgcaatag |
24420936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 24412796 - 24412885
Alignment:
| Q |
181 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggta |
270 |
Q |
| |
|
|||||||||| ||| || | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24412796 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24412885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 24421245 - 24421156
Alignment:
| Q |
181 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggta |
270 |
Q |
| |
|
|||||||||| ||| || | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24421245 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24421156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University