View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10985_low_5 (Length: 419)
Name: NF10985_low_5
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 105 - 419
Target Start/End: Original strand, 41198364 - 41198678
Alignment:
| Q |
105 |
aaaatttctgattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataatgattctgc |
204 |
Q |
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| T |
41198364 |
aaaatttctgattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataatgattctgc |
41198463 |
T |
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| Q |
205 |
ttctgggtcatctgagaaagagggtgttgtagattggtgagatgaattctcaaagaagataaatggtatgaatttcatcatcactgtattcaatttatat |
304 |
Q |
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| T |
41198464 |
ttctgggtcatctgagaaagagggtgttgtagattggtgggatgaattctcaaagaagataaatggtatgaatttcatcatcactgtattcaatttatat |
41198563 |
T |
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| Q |
305 |
aattgctaaacttttcatgcctgatatttgattttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaattttcatatctattttaca |
404 |
Q |
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| T |
41198564 |
aattgctaaacttttcatgcctgatatttgattttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaattttcatatctattttaca |
41198663 |
T |
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| Q |
405 |
tcaagataaagaccc |
419 |
Q |
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| T |
41198664 |
tcaagataaagaccc |
41198678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 273
Target Start/End: Original strand, 41208349 - 41208515
Alignment:
| Q |
113 |
tgattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataa------tgattctgctt |
206 |
Q |
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| T |
41208349 |
tgattcaattaacttgttgtgatgggtcctgtgagaggaaccaagaagagaagaaagacagagaagacacatgacaataataacggttctggttctgctt |
41208448 |
T |
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| Q |
207 |
ctgggtcatctgagaaagagggtgttgtagattggtgagatgaattctcaaagaagataaatggtat |
273 |
Q |
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| T |
41208449 |
ctgggtcatctgagaaagagggtcttgtagattggtgggatgaattgtcaaagaagatcaacggtat |
41208515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 41208525 - 41208590
Alignment:
| Q |
338 |
ttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaattttcatatctattttaca |
404 |
Q |
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| T |
41208525 |
ttttgttgatgcatcattgtttgctatgatgaatgtgttggttttcaa-tttcatatctattttaca |
41208590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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