View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10985_low_7 (Length: 285)
Name: NF10985_low_7
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 31704734 - 31704926
Alignment:
| Q |
13 |
tggacatcaacgacatagatcttgagacattggtattctggtcattttaattatcatttttgtagacaattttccattttatactaataacttgaatgtc |
112 |
Q |
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| T |
31704734 |
tggacatcaacgacatagatcctgagacattggtattctgatcattttaattgtcatttttgtagacaattttccattttatgctaataacttgaatgtc |
31704833 |
T |
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| Q |
113 |
atggatttattcacggattcatctgtttcaattttaacgacatcaaaattgtatggctttcaatgtaataaatcaatttgaataaataaatga |
205 |
Q |
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| T |
31704834 |
atgcatttattcacggattcatctgtttcaattttaccgacatcaaaattgtatggctttcaatgtaataaatcaatttgaataaataaatga |
31704926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 31705110 - 31705180
Alignment:
| Q |
198 |
ataaatgagtaccatattttgtgtaaaaagaaataatatgtaacaataataaagtattaaatggactctgt |
268 |
Q |
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| T |
31705110 |
ataaatgaataccatattttgtgtaaaaggaaataatatgtaacaataataaagtattgaatggactctgt |
31705180 |
T |
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