View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10985_low_8 (Length: 250)
Name: NF10985_low_8
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 41198794 - 41199004
Alignment:
| Q |
27 |
cttgaacatgtttgtgtatcagtagtacattgtttttcttacggaaaatgttagtagctagaatttgaaccctaaacctcattctgaaactcccaagggt |
126 |
Q |
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| T |
41198794 |
cttgaacatgtttgtgtatcagtagtacattgtttttcttacggaaaatgttagtagctagaatttgaaccctaaacctcattctgaaactcccaagggt |
41198893 |
T |
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| Q |
127 |
atcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgtatgttaagtgtctttggagattgaagcttttttcatggtt |
226 |
Q |
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| T |
41198894 |
atcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgtatgttaagtgtctttggagattgaagcttttttcatggtt |
41198993 |
T |
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| Q |
227 |
gttatttgtct |
237 |
Q |
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| T |
41198994 |
gttatttgtct |
41199004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 41208842 - 41208928
Alignment:
| Q |
101 |
aacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgta |
187 |
Q |
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| T |
41208842 |
aacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattagggaccacatagtacattgttgatggtgta |
41208928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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