View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10985_low_9 (Length: 242)
Name: NF10985_low_9
Description: NF10985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10985_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9788758 - 9788527
Alignment:
| Q |
1 |
ataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
9788758 |
ataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatttggacagaattttggttggaat |
9788659 |
T |
|
| Q |
101 |
ttgtctcctggtttgtggttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788658 |
ttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagga |
9788559 |
T |
|
| Q |
201 |
ctgtcattgtgtttgttttggcttagcctttg |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
9788558 |
ctgtcattgtgtttgttttggcttagcctttg |
9788527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 3587643 - 3587780
Alignment:
| Q |
3 |
aaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaattt |
102 |
Q |
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||||| ||||||||||| ||||||||| |||||||| |||| |||||||||||| | ||||||||||||||||| || | ||||||||||||||||||| |
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| T |
3587643 |
aaaaaccttattcttccttatgtgtgtgtatatata--ttaatatgtttgctatagggatagttgtggctctcatttgaacagaattttggttggaattt |
3587740 |
T |
|
| Q |
103 |
gtctcctggtttgtggttagagacttgactttgctttctg |
142 |
Q |
| |
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| ||||||||| ||||||||||||||||||||||||||| |
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| T |
3587741 |
atttcctggtttatggttagagacttgactttgctttctg |
3587780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 3589193 - 3589265
Alignment:
| Q |
160 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589193 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttg |
3589265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 44505442 - 44505673
Alignment:
| Q |
1 |
ataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
44505442 |
ataaaaaccttattcttccttatgtgtgtgtgtatatatattaacatgtttgctatatggatagttgtggctctcatctggacagaattttggttagaat |
44505541 |
T |
|
| Q |
101 |
ttgtctcctggtttgtggttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44505542 |
ttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagaa |
44505641 |
T |
|
| Q |
201 |
ctgtcattgtgtttgttttggcttagcctttg |
232 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
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| T |
44505642 |
ctaccattgtgtttgttttggcttagcctttg |
44505673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10013625 - 10013394
Alignment:
| Q |
1 |
ataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
10013625 |
ataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggttggaat |
10013526 |
T |
|
| Q |
101 |
ttgtctcctggtttgtggttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagga |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
10013525 |
ttgtctcctggtttgtagttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagcttgcagga |
10013426 |
T |
|
| Q |
201 |
ctgtcattgtgtttgttttggcttagcctttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
10013425 |
ctgtcattgtgtttgttttggcttagcctttg |
10013394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10020766 - 10020535
Alignment:
| Q |
1 |
ataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaat |
100 |
Q |
| |
|
||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||||||||| |
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|
| T |
10020766 |
ataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggttggaat |
10020667 |
T |
|
| Q |
101 |
ttgtctcctggtttgtggttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagga |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
10020666 |
ttgtctcctggtttgtagttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagcttgcagga |
10020567 |
T |
|
| Q |
201 |
ctgtcattgtgtttgttttggcttagcctttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
10020566 |
ctgtcattgtgtttgttttggcttagcctttg |
10020535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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