View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10986_high_4 (Length: 587)
Name: NF10986_high_4
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 148 - 572
Target Start/End: Complemental strand, 27836392 - 27835968
Alignment:
| Q |
148 |
catattttaattaaactgagacttta-ttgttctaataactaataattccaagtacagtttatggtaattgcttgtgcagattcaagggtatgcccctct |
246 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27836392 |
catattttaattaaactgagactttaattgttctaataactaataaatccaagtacagtttatggtaattgcttgtgcagattcaagggtgtgcccctct |
27836293 |
T |
|
| Q |
247 |
aacatattaggattccaacctggtgaagtctttatgatacgtaacattgccaatcttgtacctatgatgaaggtatttgcataattgtggttaaatatgt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27836292 |
aacatattaggattccaacctggtgaagtctttatgatacgtaacattgccaatcttgtgcctatgatgaaggtatttgcataattgtggttaaatatgt |
27836193 |
T |
|
| Q |
347 |
tttcaatctctataaaattacatattttttagtctctatacctactttttagtcccataaactacaaaactacacatttttagtccctacgaactaaaag |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27836192 |
tttcaatctctataaaattacatattttttagtctctatacctactttttagtcccataaactacaaaactacacatttttagtccctacgaactaacag |
27836093 |
T |
|
| Q |
447 |
aatgcactttcctaaggaccgaaagggttggtatagagactaaaaacaaaattcgaataaattataggttctaaacacataaaggagttcaaaccatttc |
546 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27836092 |
aatgcactttcctaaggaccg-aagggttggtatagagactaaaaacaaaattcaaataaattgtaggttctaaacacataaaggagttcaaaccatttc |
27835994 |
T |
|
| Q |
547 |
taacatttccctatcaccaaatttgt |
572 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27835993 |
taacatttccctatcaccaaatttgt |
27835968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 27836556 - 27836429
Alignment:
| Q |
16 |
atgaatctcttgctgaagctcaatatccaaaggtgattaacaaatagatttcagaagtccatttattcaannnnnnnccctatactatcaaatcattttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
27836556 |
atgaatctcttgctgaagctcaatatccaaaggtgattaacaaatagatttcagaagtccatttattcaatttttttccctatactatcaaatcatcttc |
27836457 |
T |
|
| Q |
116 |
acaaataatctccacaacaacacattttg |
144 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
27836456 |
acaaataatctccacaac-acacattttg |
27836429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 1939655 - 1939582
Alignment:
| Q |
193 |
ttccaagtacagtttatggtaattgcttgtgcagattcaagggtatgcccctctaacatattaggattccaacc |
266 |
Q |
| |
|
||||||| |||||| ||||| ||||| ||||||||||| |||||||||||||| || || || ||||| ||||| |
|
|
| T |
1939655 |
ttccaagaacagttcatggttattgcctgtgcagattccagggtatgcccctccaatattttgggatttcaacc |
1939582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University