View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10986_low_1 (Length: 1268)

Name: NF10986_low_1
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10986_low_1
NF10986_low_1
[»] chr5 (16 HSPs)
chr5 (482-1058)||(13878786-13879344)
chr5 (18-191)||(13878615-13878788)
chr5 (1120-1268)||(13879406-13879554)
chr5 (1120-1268)||(13875189-13875337)
chr5 (275-479)||(13874427-13874629)
chr5 (45-247)||(13884122-13884317)
chr5 (45-247)||(16024811-16025007)
chr5 (45-254)||(13882313-13882516)
chr5 (688-750)||(13874737-13874799)
chr5 (373-466)||(13884475-13884566)
chr5 (55-245)||(40165746-40165930)
chr5 (373-452)||(13872183-13872260)
chr5 (842-880)||(13884996-13885034)
chr5 (373-455)||(12957643-12957723)
chr5 (195-255)||(13871985-13872045)
chr5 (922-1003)||(13885075-13885159)


Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 482 - 1058
Target Start/End: Original strand, 13878786 - 13879344
Alignment:
Q  482 tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaaaagaaaagttatctatctattacctttggtgctaattaaaactttgta 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  13878786 tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaagtgaaaagttatctatctattacctttggtgctaattaaaactttgta 13878885  T
Q  582 tgtcctgtcgccaccatatatttgtttagcatgcacctgaaaattaaaagaacgtacatggagagaaaaccaattgccacagcagaatatcacttgattt 681  Q
    |||||||||||||||||||||| |||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878886 tgtcctgtcgccaccatatattggttta------------------aaagaacgtacatggagagaaaaccaattgccacagcagaatatcacttgattt 13878967  T
Q  682 tcaatgatcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaatataacaaaatttgaaaggtggatcgcaacaaa 781  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13878968 tcaatgatcttttctaacagctctaaatttaatgcagcaagcagttatgtgtgtacgcttcaatcaatataacaaaatttgaaaggtcgatcgcaacaaa 13879067  T
Q  782 atagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaa 881  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879068 atagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaa 13879167  T
Q  882 ttaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatt 981  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879168 ttaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatt 13879267  T
Q  982 taaaatagtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgag 1058  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13879268 taaaatagtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgag 13879344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 13878615 - 13878788
Alignment:
Q  18 ctattcaactcacaggttaacatgataataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13878615 ctattcaactcacaggttaacatgataataaactgcaaaattgtcctattcaaagtctccatttggagataactcaccctcgctcttctctttagctttt 13878714  T
Q  118 tgaactgtcgatagattcttcttggtatttgtaaacttcagtccctccagcaatggtcccatttgtgaatgtac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878715 tgaactgtcgatagattcttcttggtatttgtaaacttcagtccctccagcaatggtcccatttgtgaatgtac 13878788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 1120 - 1268
Target Start/End: Original strand, 13879406 - 13879554
Alignment:
Q  1120 cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt 1219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879406 cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt 13879505  T
Q  1220 gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagag 1268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879506 gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagag 13879554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 1120 - 1268
Target Start/End: Original strand, 13875189 - 13875337
Alignment:
Q  1120 cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt 1219  Q
    |||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||  |||    
T  13875189 cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt 13875288  T
Q  1220 gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagag 1268  Q
    ||  |||||||  |||||||||| |||||| |||||| |||||||||||    
T  13875289 gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagag 13875337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 275 - 479
Target Start/End: Original strand, 13874427 - 13874629
Alignment:
Q  275 gatcagttgatagtcccgtaaaacagttaaaagttaaatgatcgatgctatcaatgttatgattagacaagctaacaagcaatttatgg-caatagaatg 373  Q
    ||||| ||||||||||||||||||  || ||| |||||||||    | |||||||| ||||||| ||||||| | |||   |||||||| ||||||||||    
T  13874427 gatcacttgatagtcccgtaaaaccattgaaaattaaatgat----gttatcaatgctatgatttgacaagccagcaaaatatttatgggcaatagaatg 13874522  T
Q  374 aatgagaattactaagaacttcacaagtgtagtgatcacttggtcctgtaaacacaattaacaacg-aaatgaggccattaatcacttgtagtggtaagg 472  Q
    |||||||||||| ||||||||||||||||| | |||||||| ||||  |||||||||||||||||| ||||||||||||| ||||||||  || ||||||    
T  13874523 aatgagaattaccaagaacttcacaagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgatcacttgacgttgtaagg 13874622  T
Q  473 aaaaata 479  Q
    | |||||    
T  13874623 acaaata 13874629  T

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Target: chr5; HSP #6
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 13884122 - 13884317
Alignment:
Q  45 ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcgatagattcttcttggta 144  Q
    |||||||| ||||||  ||| |||||||| |||||||||||||||||    | | |||||||||||  | ||||||||||||||| ||||||||||||||    
T  13884122 ataaactgaaaaattaacctcttcaaagtttccatttggagataact----cacactcttctcttttac-ttttgaactgtcgatcgattcttcttggta 13884216  T
Q  145 tttgtaaacttcagtccctccagcaatggtcccatttgtgaatgtacacctggtgttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattca 244  Q
    | ||  ||||||||| ||||||||||||| |||||||||||||||  ||||| | ||||| ||||| ||||| ||||||||| ||||||| ||  |||||    
T  13884217 tctgctaacttcagtgcctccagcaatggccccatttgtgaatgt--acctgatcttgcaaaatcatcaacctaaaccatgataaagaaagaagcattca 13884314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 16024811 - 16025007
Alignment:
Q  45 ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcga-tagattcttcttggt 143  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| |||    ||||||||||| || ||||||||||| || | ||||| |||||||    
T  16024811 ataaactgcaaaattatcctcttcaaagtctccatttggagataactcacc----ctcttctctttcgc-ttttgaactgtggattcgattcctcttggt 16024905  T
Q  144 atttgtaaacttcagtccctccagcaatggtcccatttgtgaatgtacacctggtgttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattc 243  Q
    || || | |||||||| |||||||||| || |||||||||| |||  ||  | || | |||||||||||| || ||||||||| ||||||| ||| ||||    
T  16024906 atctgcacacttcagtgcctccagcaacggccccatttgtggatg--catatagtctagcagaatcaccaccctaaaccatgataaagaaaaaaacattc 16025003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 13882313 - 13882516
Alignment:
Q  45 ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcgata-gattcttcttggt 143  Q
    |||||||| |||| | |||| |||||||| |||||||  ||||||||    ||| ||||||||||| |||||| ||||||| |||  |||||||||||||    
T  13882313 ataaactgaaaaactatcctcttcaaagtttccatttcaagataact----ctccctcttctctttggctttt-gaactgttgatttgattcttcttggt 13882407  T
Q  144 atttgtaaacttcagtccctccagcaatggtcccatttgtgaatgtacacctggtgttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattc 243  Q
    || || |||||||||| |||||||| |||| |||| | ||||||||  | ||||| ||||| ||||||||  | ||||||||| ||||||||||| ||||    
T  13882408 atctgcaaacttcagtgcctccagcgatggccccaatcgtgaatgt--aactggtcttgcaaaatcaccactctaaaccatgataaagaaacaaacattc 13882505  T
Q  244 agcaatacatt 254  Q
    |||| ||||||    
T  13882506 agcagtacatt 13882516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 688 - 750
Target Start/End: Original strand, 13874737 - 13874799
Alignment:
Q  688 atcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaata 750  Q
    |||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||||||    
T  13874737 atcttttctaacagctctaagtataatgcagcaagcaattatgtgtgtacgcttcaatcaata 13874799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 373 - 466
Target Start/End: Original strand, 13884475 - 13884566
Alignment:
Q  373 gaatgagaattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaatcacttgtagtg 466  Q
    |||||| |||||| |||||||||| ||||||||||||||||||   ||  |||||||||||||||| ||||||| ||||||||| ||||| ||||    
T  13884475 gaatgacaattaccaagaacttcaacaagtgtagtgatcactt---cccataaacacaattaacaaggaaatgaagccattaattacttgcagtg 13884566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 40165930 - 40165746
Alignment:
Q  55 aaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcgata-gattcttcttggtatttgtaaac 153  Q
    ||||| |||| |||||||||||| ||||||||||||| ||||||    |||| ||| |||||| |||||||||||  ||||| ||||| ||| || | |     
T  40165930 aaattatcctcttcaaagtctccgtttggagataactcaccctc----ttctttttcgctttt-gaactgtcgatttgattcctcttgatatctgcacat 40165836  T
Q  154 ttcagtccctccagcaatggtcccatttgtgaatgtacacctggtgttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattcag 245  Q
     ||||| |||||||| |||  |||||||||| ||| |||  | || | |||||||||||| || ||||||||| ||||||||||| ||||||    
T  40165835 gtcagtgcctccagcgatgaccccatttgtggatgcaca--tagtctagcagaatcaccagcctaaaccatgataaagaaacaaacattcag 40165746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 373 - 452
Target Start/End: Original strand, 13872183 - 13872260
Alignment:
Q  373 gaatgagaattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccatt 452  Q
    |||||| |||||| |||||||||| ||||||||||||||||||   ||| |||||||||||||||| |||||| |||||||    
T  13872183 gaatgacaattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaaggaaatggggccatt 13872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 842 - 880
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
Q  842 taatcatatatttataatattgattgatagcaattggta 880  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  13884996 taatcatatatttataatattgattgataccaattggta 13885034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 455
Target Start/End: Complemental strand, 12957723 - 12957643
Alignment:
Q  373 gaatgagaattactaagaacttcacaa-gtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaat 455  Q
    |||||| |||||| |||||||||| || ||||||| |||||||   ||  |||||||||||||||| |||||||||||||||||    
T  12957723 gaatgacaattaccaagaacttcaaaaagtgtagtaatcactt---cccataaacacaattaacaaggaaatgaggccattaat 12957643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 13871985 - 13872045
Alignment:
Q  195 tggtgttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattcagcaatacatta 255  Q
    |||| ||||||||||||||  | ||||||||| ||||||||||| |||||||| |||||||    
T  13871985 tggtcttgcagaatcaccactctaaaccatgataaagaaacaaacattcagcagtacatta 13872045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 922 - 1003
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
Q  922 actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta 1003  Q
    |||||||||| ||||||||  ||||||||||||| |||||||    || ||||||| | |||||||||||| |||||||| ||||    
T  13885075 actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta 13885159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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