View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10986_low_10 (Length: 249)
Name: NF10986_low_10
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 26061153 - 26061290
Alignment:
| Q |
106 |
atgagatccttttgcaagagtcgtgacttttgttatccaaaatccaaatcagcgttcttggtgtagtactcaatgtaccgctctggttttgatatggtga |
205 |
Q |
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| T |
26061153 |
atgagatccttttgcaagagtcgtgacttttgttctccaaaatccaaatcagcgttcttggtgtagtactcaatgtacaactctggttttgatatggtga |
26061252 |
T |
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| Q |
206 |
gacctgatgtaattttttatggaggatgtctgtgctgc |
243 |
Q |
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| T |
26061253 |
gacctgatgtaattttttatggaggatgtttgtgctgc |
26061290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 26081123 - 26081260
Alignment:
| Q |
106 |
atgagatccttttgcaagagtcgtgacttttgttatccaaaatccaaatcagcgttcttggtgtagtactcaatgtaccgctctggttttgatatggtga |
205 |
Q |
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| T |
26081123 |
atgagatccttttgcaagagtcgtgacttttgttctccaaaatccaaatcagcgttcttggtgtagtactcaatgtacaactctggttttgatatggtga |
26081222 |
T |
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| Q |
206 |
gacctgatgtaattttttatggaggatgtctgtgctgc |
243 |
Q |
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| T |
26081223 |
gacctgatgtaattttttatggaggatgtttgtgctgc |
26081260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 25487905 - 25488042
Alignment:
| Q |
106 |
atgagatccttttgcaagagtcgtgacttttgttatccaaaatccaaatcagcgttcttggtgtagtactcaatgtaccgctctggttttgatatggtga |
205 |
Q |
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| T |
25487905 |
atgagatccttttgcaagagtcgtgacttttgttctccaaaatccaaatcagcgttcttggtgtagtactcgatgtacaactctggttttgatatggtga |
25488004 |
T |
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| Q |
206 |
gacctgatgtaattttttatggaggatgtctgtgctgc |
243 |
Q |
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| T |
25488005 |
gacctgatgtaattttttatggaggatgtttgtgctgc |
25488042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 27659811 - 27659678
Alignment:
| Q |
104 |
ttatgagatccttttgcaagagtcgtgacttttgttatccaaaatccaaatcagcgttcttggtgtagtactcaatgtaccgctctggttttgatatggt |
203 |
Q |
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| T |
27659811 |
ttatgagatccttttgcaagagtcgtg-cttttgttctccaaaatcctaatcaatgttattggtataatactcaatgcac---tctggtttttatatggt |
27659716 |
T |
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| Q |
204 |
gagacctgatgtaattttttatggaggatgtctgtgct |
241 |
Q |
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| T |
27659715 |
gagacatgatgtaagtttttaaggaggatgtttgtgct |
27659678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 27587861 - 27587803
Alignment:
| Q |
185 |
gctctggttttgatatggtgagacctgatgtaattttttatggaggatgtctgtgctgc |
243 |
Q |
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| T |
27587861 |
gctctggtattgatatagtgagacctgatgtaaggttttgtggaggatgtttgtgctgc |
27587803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 26060079 - 26060112
Alignment:
| Q |
71 |
acctataaatgtatggataatttaagtagtacat |
104 |
Q |
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| T |
26060079 |
acctataaatgtatggataatttaagtagtacat |
26060112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 26080049 - 26080082
Alignment:
| Q |
71 |
acctataaatgtatggataatttaagtagtacat |
104 |
Q |
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| T |
26080049 |
acctataaatgtatggataatttaagtagtacat |
26080082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 27700902 - 27700867
Alignment:
| Q |
104 |
ttatgagatccttttgcaagagtcgtgacttttgtt |
139 |
Q |
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| T |
27700902 |
ttatgagatccttttgcaagagtcgtgacctttgtt |
27700867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 27599691 - 27599642
Alignment:
| Q |
194 |
ttgatatggtgagacctgatgtaattttttatggaggatgtctgtgctgc |
243 |
Q |
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| T |
27599691 |
ttgatatggtgatacctgatgtaagtttttagggaggatgcttgtgctgc |
27599642 |
T |
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