View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10986_low_12 (Length: 204)
Name: NF10986_low_12
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 31963443 - 31963269
Alignment:
| Q |
13 |
cataggagcatttaagtcttagattcatgtatttagggagttggatttgtattacttctccttataaacttaacatgtaattaattatgaaatgtataca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31963443 |
cataggagcatttaagtcttagattcatgtatttagggagttggatttgtattacttctccttataaacttaacatgtaattaattatgaaatgtataca |
31963344 |
T |
|
| Q |
113 |
aatatcatggtggctgagttctgtactcactcaaccacattcagaacatttcttctccatatttttcatgattct |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31963343 |
aatatcatggtggctgagttctgtactcactcaaccacattcagaacatttcttctccatatttttcacgattct |
31963269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 36084404 - 36084551
Alignment:
| Q |
31 |
ttagattcatgtatttagggagttggatttgtat-tacttctccttataaacttaacatgtaattaattatgaaatgtatacaaatatcatggtggctga |
129 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || |||||||| ||||| |||||||| |||||| ||| | | || | ||||| |||||| ||||| |
|
|
| T |
36084404 |
ttagattcatgtctttagggagttggacctgcatgtatttctccttgtaaacataacatgttattaataatggagtctaaataaataacatggttgctga |
36084503 |
T |
|
| Q |
130 |
gttctgtactcactcaaccacattcagaacatttcttctccatatttt |
177 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | ||||||||| |||||| |
|
|
| T |
36084504 |
gttctttactcactcaagcacattcagaaaaattcttctccctatttt |
36084551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 889558 - 889701
Alignment:
| Q |
38 |
catgtatttagggagttggatttgtatt-acttctccttataaacttaacatgtaattaattatgaaatgtatacaaatatcatggtggctgagttctgt |
136 |
Q |
| |
|
|||| ||||||||||||||| | |||| | || ||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||||| | || | |
|
|
| T |
889558 |
catgcatttagggagttggacctatatttatttatccttgtaaacataacatgtaattaattatgaagtgtatataaatatcatggtggctgactgcttt |
889657 |
T |
|
| Q |
137 |
actcactcaaccacattcagaacatttcttctccatatttttca |
180 |
Q |
| |
|
||| |||| | ||||||||||| ||||||| | | ||||||||| |
|
|
| T |
889658 |
acttactcgagcacattcagaaaatttcttattcctatttttca |
889701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 45566950 - 45567020
Alignment:
| Q |
77 |
taaacttaacatgtaattaattatgaaatgtatacaaatatcatggtggctgag-ttctgtactcactcaa |
146 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||| |||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
45566950 |
taaacataacatgtaattaatcatgaagtgtatataaatatcatggttactgagtttctttactcactcaa |
45567020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 15661749 - 15661838
Alignment:
| Q |
31 |
ttagattcatgtatttagggagttggatttgta-ttacttctccttataaacttaacatgtaattaattatgaaatgtatacaaatatca |
119 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||| ||| |||||||| ||||| ||||||||| ||||||||| | |||||| |||||||| |
|
|
| T |
15661749 |
ttagattcatgtattcagggagctggagttgtatttatttctccttgtaaacataacatgtagttaattatggattgtatataaatatca |
15661838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University