View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10986_low_2 (Length: 986)
Name: NF10986_low_2
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Complemental strand, 27836955 - 27836429
Alignment:
| Q |
16 |
gacatcaatccaaattatatcttcacttagaaaagtttcatgcatttgtttgctacttnnnnnnn-tattttataaggggtaaaacactattaacctatt |
114 |
Q |
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| T |
27836955 |
gacatcaatccaaattatatcttcactt-gaaaagtttcatgcatttgtttgctatttaaaaaaaatattttacaagtgataaagcactattaacctatt |
27836857 |
T |
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| Q |
115 |
tataactaacatttgatcacaattatatgatttgtcttctttaactgtagggagaaacagccagaggatcttggtaatgaaaataaaagtcttgatgtag |
214 |
Q |
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| T |
27836856 |
tataactaatatttgatcacaattatatgatttgtcttctttaactgtagggagaaacagccagaggatattggtaatgaaaataaaggtcttgatgtag |
27836757 |
T |
|
| Q |
215 |
ggaatatgactgaaattgatggctacctaaatttatttggtttgatgaaacaaaggtttttaaatttcaagaaccaaaagtacatgtaagatttaagttg |
314 |
Q |
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| T |
27836756 |
ggaatatgactgaaattgatggctacctaaatttatttggtttgatgaaacaaaggtttttaaatttcaagaaccaaaagtacatgtaagatttaagttg |
27836657 |
T |
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| Q |
315 |
cacattttttcaattttcaactttgcaaaaatttgttcctttttgttagccaagtatcttataaactattttcttttagacaggaaagagttggagcatt |
414 |
Q |
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| T |
27836656 |
cacatttttccaattttcaactttgcaaaaatttgttcctttttgttagccaagtatcttataaactattttcttttagacaggaaagagttggaccatt |
27836557 |
T |
|
| Q |
415 |
atgaatctcttgctgaagctcaatatccaaaggtgattaacaaatagatttcagaagtccatttattcaannnnnnnccctatactatcaaatcattttc |
514 |
Q |
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| T |
27836556 |
atgaatctcttgctgaagctcaatatccaaaggtgattaacaaatagatttcagaagtccatttattcaatttttttccctatactatcaaatcatcttc |
27836457 |
T |
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| Q |
515 |
acaaataatctccacaacaacacattttg |
543 |
Q |
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| T |
27836456 |
acaaataatctccacaac-acacattttg |
27836429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 547 - 971
Target Start/End: Complemental strand, 27836392 - 27835968
Alignment:
| Q |
547 |
catattttaattaaactgagacttta-ttgttctaataactaataattccaagtacagtttatggtaattgcttgtgcagattcaagggtatgcccctct |
645 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27836392 |
catattttaattaaactgagactttaattgttctaataactaataaatccaagtacagtttatggtaattgcttgtgcagattcaagggtgtgcccctct |
27836293 |
T |
|
| Q |
646 |
aacatattaggattccaacctggtgaagtctttatgatacgtaacattgccaatcttgtacctatgatgaaggtatttgcataattgtggttaaatatgt |
745 |
Q |
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| T |
27836292 |
aacatattaggattccaacctggtgaagtctttatgatacgtaacattgccaatcttgtgcctatgatgaaggtatttgcataattgtggttaaatatgt |
27836193 |
T |
|
| Q |
746 |
tttcaatctctataaaattacatattttttagtctctatacctactttttagtcccataaactacaaaactacacatttttagtccctacgaactaaaag |
845 |
Q |
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| T |
27836192 |
tttcaatctctataaaattacatattttttagtctctatacctactttttagtcccataaactacaaaactacacatttttagtccctacgaactaacag |
27836093 |
T |
|
| Q |
846 |
aatgcactttcctaaggaccgaaagggttggtatagagactaaaaacaaaattcgaataaattataggttctaaacacataaaggagttcaaaccatttc |
945 |
Q |
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| T |
27836092 |
aatgcactttcctaaggaccg-aagggttggtatagagactaaaaacaaaattcaaataaattgtaggttctaaacacataaaggagttcaaaccatttc |
27835994 |
T |
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| Q |
946 |
taacatttccctatcaccaaatttgt |
971 |
Q |
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| T |
27835993 |
taacatttccctatcaccaaatttgt |
27835968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 665
Target Start/End: Complemental strand, 1939655 - 1939582
Alignment:
| Q |
592 |
ttccaagtacagtttatggtaattgcttgtgcagattcaagggtatgcccctctaacatattaggattccaacc |
665 |
Q |
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||||||| |||||| ||||| ||||| ||||||||||| |||||||||||||| || || || ||||| ||||| |
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| T |
1939655 |
ttccaagaacagttcatggttattgcctgtgcagattccagggtatgcccctccaatattttgggatttcaacc |
1939582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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