View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10986_low_5 (Length: 484)
Name: NF10986_low_5
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 5 - 449
Target Start/End: Original strand, 5989694 - 5990147
Alignment:
| Q |
5 |
atttatatatctaagtcaacaacaattctaa---------ttctcaactcgtcgttaatcaaatcgaatacgagtagcattgaaaggaaaactcttagac |
95 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5989694 |
atttacatatctaagtcaacaacaattctaaaaaaaacaattctcaactcatcgttaatcaaatcgaatacgagtatcattgaaaggaaaactcttagac |
5989793 |
T |
|
| Q |
96 |
ttctacctcacctctaaactgcaagtttatggggctagatgaaccacatgagtatgacatcccatctcatgtaattttatatcaaaacaattttctatga |
195 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5989794 |
ttctacctcacttctaaactgcaagtttatggggctagatgaaccacatgagtatgacatcccatctcatgtaattttatatcaaaacaattttctatga |
5989893 |
T |
|
| Q |
196 |
agaagttcgaagacatcaacatcatttaagttccttggttgaaagcgtaatatcggataaactatcaaaactaaaaaatatgaaagtatcaagccaccac |
295 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5989894 |
agaagctcgaagacatcaacatcatttaggttccttggttgaaagcgtaatatcggataaactctcaaaactaaaaaatatgaaagtatcaagccaccac |
5989993 |
T |
|
| Q |
296 |
aaattcatagccttctagattttacatgcctctagtgtcgatgtgggtaaaggaattcaaagattatctcataaacaagatacttcctaacaatgtggaa |
395 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
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| T |
5989994 |
aaattcatagcattctagattttacatgcctctagtgtcgatgtgggtaaaggaattcaaagattatctaataaacaatatacttcctaacaacgtggaa |
5990093 |
T |
|
| Q |
396 |
acgactcggaaactcaagtgagatgtaacacactacaccttcattgctaataaa |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5990094 |
acgactcggaaactcaagtgagatgtaacacactacaccttcattgctaataaa |
5990147 |
T |
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