View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10986_low_6 (Length: 412)
Name: NF10986_low_6
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 47163020 - 47162881
Alignment:
| Q |
1 |
tcatcacaaaagaagactagtactaaagaattgagggccccttcccttattggaagaaccagtggttaattttcaattttgaaattgaaaaattcaatca |
100 |
Q |
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| T |
47163020 |
tcatcacaaaagaagactagtactaaagaattgagggccccttcccttattggaagaaccagtggttaattttcaattttgaaattgaaaaattcaacca |
47162921 |
T |
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| Q |
101 |
atgaactatggacaacttggatgaaattttctgcactgcc |
140 |
Q |
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| T |
47162920 |
atgaactatggacaacttggatgaaattttctgcactgcc |
47162881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 47162803 - 47162673
Alignment:
| Q |
282 |
ctcagtgtaaccaaaaagaaaacaaaagagactttaacttgaatttgagcttaaaataggcataaaaggaaaggggaacgaaaacagtttttcttgaaga |
381 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47162803 |
ctcaatgtaaccaaaaagaaaacaaaagagacttaaacttgaatttgagcttaaaataggcataaaaggaaaggggaacgaaaacagtttttcttgaaga |
47162704 |
T |
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| Q |
382 |
gtcatgggagaagaacacaagacatagagat |
412 |
Q |
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||||||||||||||||| ||||||||||||| |
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| T |
47162703 |
gtcatgggagaagaacaaaagacatagagat |
47162673 |
T |
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