View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10986_low_7 (Length: 359)
Name: NF10986_low_7
Description: NF10986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10986_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 8978123 - 8977791
Alignment:
| Q |
13 |
gagatgaacaaattatatttgacacttaattttgtatatatttctttctttctatcacatgagcaacacatatgttcaataatgacatttaaagttaaac |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8978123 |
gagaagaacaaattatatttgacacttaattttgtatatatttctttctttctatcacatgagcaacacatatgttcaataatgacatgtaaagttaaac |
8978024 |
T |
|
| Q |
113 |
catatccatttacaacaacttt-gaaactactttatttttctctattcttattgataaaaactgtccagaaagaaagaaaatgaaagagaatgatcgata |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
8978023 |
catatccatttacaacaacttttgaaactactttatttttctctattcttatcgataaaaacggtagagaaagaaagaaaatgaaagagaatgatcgata |
8977924 |
T |
|
| Q |
212 |
tatgagatagttttccacaatttatcccaaaacagtgatacaaatttgacgactgatcaaatacctcttttaatcctttaagtttgataaaaatacttga |
311 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
8977923 |
tatgagagagttttccacaatttgtctcaaaatagtgatataaatttggcgactgatcaaatacctcttttaatcctttaagtttgataaaagtacttaa |
8977824 |
T |
|
| Q |
312 |
ttaatctttaagttttacatagatactttaagt |
344 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||| |
|
|
| T |
8977823 |
ttagtctttaagtttcacatagatcctttaagt |
8977791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 303
Target Start/End: Complemental strand, 42159008 - 42158973
Alignment:
| Q |
268 |
tcaaatacctcttttaatcctttaagtttgataaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42159008 |
tcaaatacctcttttaatcctttaagtttgacaaaa |
42158973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 3849013 - 3848973
Alignment:
| Q |
268 |
tcaaatacctcttttaatcctttaagtttgataaaaatact |
308 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
3849013 |
tcaaatacctcttttacttctttaagtttgataaaaatact |
3848973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 45111122 - 45111155
Alignment:
| Q |
273 |
tacctcttttaatcctttaagtttgataaaaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
45111122 |
tacctcttttaatcctttaagtttgacaaaaata |
45111155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 6081262 - 6081234
Alignment:
| Q |
279 |
ttttaatcctttaagtttgataaaaatac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6081262 |
ttttaatcctttaagtttgataaaaatac |
6081234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 7119367 - 7119331
Alignment:
| Q |
270 |
aaatacctcttttaatcctttaagtttgataaaaata |
306 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
7119367 |
aaatacctattttactcctttaagtttgataaaaata |
7119331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University