View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10987_high_3 (Length: 304)

Name: NF10987_high_3
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10987_high_3
NF10987_high_3
[»] chr8 (6 HSPs)
chr8 (50-272)||(41381638-41381864)
chr8 (195-255)||(41381865-41381925)
chr8 (142-195)||(36339946-36339999)
chr8 (201-231)||(36339983-36340013)
chr8 (145-195)||(41381903-41381953)
chr8 (50-99)||(36339832-36339881)
[»] chr4 (18 HSPs)
chr4 (50-289)||(11910738-11910976)
chr4 (53-195)||(4887799-4887941)
chr4 (193-289)||(12387018-12387114)
chr4 (195-289)||(11910919-11911012)
chr4 (148-195)||(31982474-31982521)
chr4 (195-257)||(12386982-12387044)
chr4 (142-195)||(52631208-52631261)
chr4 (142-195)||(19752701-19752754)
chr4 (142-195)||(19787052-19787105)
chr4 (145-195)||(11910990-11911040)
chr4 (201-231)||(19752738-19752768)
chr4 (201-231)||(19787038-19787068)
chr4 (149-195)||(31982607-31982653)
chr4 (50-100)||(52631093-52631143)
chr4 (50-99)||(19752588-19752637)
chr4 (50-99)||(19787169-19787218)
chr4 (207-284)||(31982540-31982617)
chr4 (201-233)||(52631245-52631277)
[»] chr5 (9 HSPs)
chr5 (50-221)||(35046190-35046351)
chr5 (195-257)||(35046351-35046413)
chr5 (142-195)||(32243572-32243625)
chr5 (142-195)||(17131277-17131330)
chr5 (208-279)||(19285134-19285205)
chr5 (201-231)||(17131314-17131344)
chr5 (201-231)||(32243609-32243639)
chr5 (50-99)||(17131162-17131211)
chr5 (50-99)||(32243459-32243508)
[»] scaffold0179 (2 HSPs)
scaffold0179 (2-51)||(11640-11689)
scaffold0179 (2-51)||(23426-23475)
[»] chr2 (3 HSPs)
chr2 (148-195)||(27408219-27408266)
chr2 (207-280)||(27408124-27408196)
chr2 (148-196)||(20007714-20007762)
[»] scaffold0015 (3 HSPs)
scaffold0015 (142-195)||(63243-63296)
scaffold0015 (201-231)||(63229-63259)
scaffold0015 (50-99)||(63360-63409)
[»] chr7 (12 HSPs)
chr7 (142-195)||(35819271-35819324)
chr7 (148-196)||(37707258-37707306)
chr7 (148-195)||(29914676-29914723)
chr7 (149-195)||(21493765-21493811)
chr7 (201-231)||(21493795-21493825)
chr7 (149-195)||(26246926-26246972)
chr7 (202-284)||(27873796-27873877)
chr7 (201-231)||(35819308-35819338)
chr7 (50-99)||(21493912-21493961)
chr7 (50-94)||(4896559-4896603)
chr7 (143-175)||(4896676-4896708)
chr7 (201-249)||(26246956-26247004)
[»] chr3 (2 HSPs)
chr3 (195-257)||(35085290-35085352)
chr3 (143-194)||(35085331-35085382)
[»] chr1 (4 HSPs)
chr1 (150-192)||(19027394-19027436)
chr1 (145-175)||(19027492-19027522)
chr1 (142-195)||(6161742-6161795)
chr1 (205-246)||(10030051-10030092)
[»] chr6 (1 HSPs)
chr6 (211-280)||(32093227-32093296)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 50 - 272
Target Start/End: Original strand, 41381638 - 41381864
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 149  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||    
T  41381638 atttgtgtttgattaattttatttctttatttatattaaataagtggaaaatgcattactgacagagtttttccttggtaatgtgattctccataaatat 41381737  T
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgagggaat----aacccctcagta 245  Q
    || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    || || ||||||    
T  41381738 tattggcagaattttccgtcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagctttacggagggaattaccaatccgtcagta 41381837  T
Q  246 attagtgacggacctattccgtcagta 272  Q
    |||| ||||||| ||| || |||||||    
T  41381838 attactgacggatctaatctgtcagta 41381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 41381925 - 41381865
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacg 255  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  41381925 aatgatgaggtagttttgacaaagctttacggagggaataacccctcagtaattactgacg 41381865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 36339946 - 36339999
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  36339946 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 36339999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 36339983 - 36340013
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  36339983 gaggtagttttgacaaagcattactgaggga 36340013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 41381953 - 41381903
Alignment:
Q  145 aatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||| ||||||||||||||||||||   ||||| |||||||||||    
T  41381953 aatattactgacggaattttccctcagtaatgatgaggtagttttgacaaa 41381903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 36339832 - 36339881
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  36339832 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 36339881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 289
Target Start/End: Original strand, 11910738 - 11910976
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 149  Q
    |||||||||| ||||||||| |||||||| || |||   ||||||||||||||||||||| ||| |||||| || | |||||||| |||  |||||||||    
T  11910738 atttgtgtttaattaattttgtttctttaattttatcagaaaagtggaaaatgcattactgacaaaattttcccacagtaatgtggttcgccataaatat 11910837  T
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaatta 249  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  11910838 tactggcggaattttccctcagtaatgtagaggtggttttgacaaaatggtgaggtagttttgacaaagcattactgagggaataatccctcaataatta 11910937  T
Q  250 gtgacggacctattccgtcagtaattactgagggattatt 289  Q
     ||||||| || |||||| |||||||| ||||||||||||    
T  11910938 ctgacggaact-ttccgttagtaattattgagggattatt 11910976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 4887941 - 4887799
Alignment:
Q  53 tgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatattac 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||    
T  4887941 tgtgtttgattaattttatttctttatttatattaaaaaagtggaaaatgcattactgacataatttttcctcggtaatgtgattctccataaatgttac 4887842  T
Q  153 tggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    || | ||||||||||||||||||  |||| | |||||||||||    
T  4887841 tgactgaattttccctcagtaatgaagagatagttttgacaaa 4887799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 12387114 - 12387018
Alignment:
Q  193 aaaatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactgagggattatt 289  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| | ||||||||    
T  12387114 aaaatggtgaggtagttttgacaaagcattactgagggaataacccctcactaatcactgacggacctattccgtcagtaattactaaaggattatt 12387018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 11911012 - 11910919
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactgagggattatt 289  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||| |||||| | |||||    ||||||||||||||| ||||||||||||    
T  11911012 aatgaagagatagttttgacaaagcattactgagggaataatccctcaataattactaacgga-aagttccgtcagtaattattgagggattatt 11910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 31982474 - 31982521
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  31982474 attactggcggaattttccctcagtaatgtaaaggtggttttgacaaa 31982521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 12386982 - 12387044
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacgga 257  Q
    ||||| ||| ||||||||||||||||||||||||||||||| || | |||||||| |||||||    
T  12386982 aatgaagagatagttttgacaaagcattactgagggaataatcctttagtaattactgacgga 12387044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 52631208 - 52631261
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  52631208 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 52631261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 19752701 - 19752754
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||||||||||||||||| |||||||||  |||||| |||||||||||    
T  19752701 ataaacattactggcggaattttctctcagtaatgcagaggtagttttgacaaa 19752754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 19787105 - 19787052
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||||||||||||||||| |||||||||  |||||| |||||||||||    
T  19787105 ataaacattactggcggaattttctctcagtaatgcagaggtagttttgacaaa 19787052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 11911040 - 11910990
Alignment:
Q  145 aatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||| ||||||||||||||||||||  |||| | |||||||||||    
T  11911040 aatattactgacggaattttccctcagtaatgaagagatagttttgacaaa 11910990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 19752738 - 19752768
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  19752738 gaggtagttttgacaaagcattactgaggga 19752768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 19787068 - 19787038
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  19787068 gaggtagttttgacaaagcattactgaggga 19787038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 31982653 - 31982607
Alignment:
Q  149 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||| |||||||||||||| | ||| |||||||||||||    
T  31982653 ttactggcggaaatttccctcagtaatgttgagatggttttgacaaa 31982607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 52631093 - 52631143
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaa 100  Q
    |||||||||| || ||||||||||||||| ||| | |||||||||||||||    
T  52631093 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaaa 52631143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 19752588 - 19752637
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  19752588 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 19752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 19787218 - 19787169
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  19787218 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 19787169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 31982617 - 31982540
Alignment:
Q  207 gttttgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactgaggga 284  Q
    |||||||||||| |||||||||||| ||  ||||||||||||| || ||||   | |||  |||||||||||||||||    
T  31982617 gttttgacaaagtattactgagggattattccctcagtaattactggcggaaacaatccaccagtaattactgaggga 31982540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 52631245 - 52631277
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggaat 233  Q
    ||||||||||||||||||||||| |||||||||    
T  52631245 gaggtagttttgacaaagcattattgagggaat 52631277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 35046190 - 35046351
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 149  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |          ||||| |||||||||    
T  35046190 atttgtgtttgattaattttatttctttatttatattaaataagtggaaaatgcattactgacagaatttttctt----------attctccataaatat 35046279  T
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcat 221  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35046280 tactggcggaattttccctcaataatctagaggtggtttttacaaaatgatgaggtagttttgacaaagcat 35046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 35046413 - 35046351
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacgga 257  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  35046413 aatgaagagatagttttgacaaaacattactgagggaataatccctcagtaattactgacgga 35046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 32243572 - 32243625
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  32243572 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 32243625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 17131277 - 17131330
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||||||||||||| |||||||||||||  |||||| |||||||||||    
T  17131277 ataaacattactggcggaatattccctcagtaatgcagaggtagttttgacaaa 17131330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 19285134 - 19285205
Alignment:
Q  208 ttttgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactg 279  Q
    ||||||| |||||||||||||||| ||  ||||||||||||| || | || | || ||||||||||||||||    
T  19285134 ttttgacgaagcattactgagggattattccctcagtaattactggcagaacaatcccgtcagtaattactg 19285205  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 17131314 - 17131344
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  17131314 gaggtagttttgacaaagcattactgaggga 17131344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 32243609 - 32243639
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  32243609 gaggtagttttgacaaagcattactgaggga 32243639  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17131162 - 17131211
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  17131162 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 17131211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 32243459 - 32243508
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  32243459 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 32243508  T

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Target: scaffold0179 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11640 - 11689
Alignment:
Q  2 cctatgactgcaactcgatttcgtgtttgatatgcaactcgcgatttcat 51  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11640 cctatgactgcaactcgatttcgtgttcaatatgcaactcgcgatttcat 11689  T

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Target: scaffold0179; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 23475 - 23426
Alignment:
Q  2 cctatgactgcaactcgatttcgtgtttgatatgcaactcgcgatttcat 51  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23475 cctatgactgcaactcgatttcgtgttctatatgcaactcgcgatttcat 23426  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 27408266 - 27408219
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  27408266 attactggcggaattttccctcagtaatgtaaaggtggttttgacaaa 27408219  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 27408124 - 27408196
Alignment:
Q  207 gttttgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactga 280  Q
    |||||||||||| |||||||||||| ||  ||||||||||||| || |||| | | ||||||||||||||||||    
T  27408124 gttttgacaaagtattactgagggattattccctcagtaattactggcggaac-aatccgtcagtaattactga 27408196  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 20007714 - 20007762
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaaa 196  Q
    |||||||| |||| |||| |||||||||  |||||||||||||||||||    
T  20007714 attactggtggaaatttctctcagtaatgaagaggtggttttgacaaaa 20007762  T

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Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 63296 - 63243
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  63296 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 63243  T

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Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 63259 - 63229
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  63259 gaggtagttttgacaaagcattactgaggga 63229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 63409 - 63360
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  63409 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 63360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 35819271 - 35819324
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  35819271 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 35819324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 37707258 - 37707306
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaaa 196  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  37707258 attactggcggaattttccatcagtaatgaagaggtggttttgacaaaa 37707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 29914723 - 29914676
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||    
T  29914723 attactggcggaatttttcctcagtaatgtaaaggtggttttgacaaa 29914676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 21493765 - 21493811
Alignment:
Q  149 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||    
T  21493765 ttactggcggaattttccctcagtaatggagaggtagttttgacaaa 21493811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 21493795 - 21493825
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  21493795 gaggtagttttgacaaagcattactgaggga 21493825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 26246926 - 26246972
Alignment:
Q  149 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||    
T  26246926 ttactggcggaatttttcctcagtaatagagaggtagttttgacaaa 26246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 27873877 - 27873796
Alignment:
Q  202 aggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactgaggga 284  Q
    |||||||| ||||||||||||||||| ||| ||  ||||||||||||| ||| |||  | ||||| |||||||||| ||||||    
T  27873877 aggtagttctgacaaagcattactgatggattattccctcagtaattactgaggga-ttgttccgccagtaattaccgaggga 27873796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 35819308 - 35819338
Alignment:
Q  201 gaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||||||||    
T  35819308 gaggtagttttgacaaagcattactgaggga 35819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 21493961 - 21493912
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  21493961 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 21493912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 4896559 - 4896603
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagt 94  Q
    |||||||||| |||||||||||||||||| ||| | |||||||||    
T  4896559 atttgtgtttaattaattttatttctttaattaaaattaaaaagt 4896603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 4896676 - 4896708
Alignment:
Q  143 taaatattactggcggaattttccctcagtaat 175  Q
    |||| ||||||||||||||||||||||||||||    
T  4896676 taaacattactggcggaattttccctcagtaat 4896708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 26246956 - 26247004
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggaataacccctcagtaatta 249  Q
    ||||||||||||||||||||||||||| ||| ||  || ||||||||||    
T  26246956 gaggtagttttgacaaagcattactgatggattattccttcagtaatta 26247004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 35085352 - 35085290
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgagggaataacccctcagtaattagtgacgga 257  Q
    ||||| ||||| |||||||||| |||||||||||||| ||  ||||||||||||| |||||||    
T  35085352 aatgaagaggtggttttgacaatgcattactgagggattattccctcagtaattactgacgga 35085290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 35085382 - 35085331
Alignment:
Q  143 taaatattactggcggaattttccctcagtaatctagaggtggttttgacaa 194  Q
    |||| |||||| ||||||||||||||| |||||  |||||||||||||||||    
T  35085382 taaacattactagcggaattttccctcggtaatgaagaggtggttttgacaa 35085331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 19027394 - 19027436
Alignment:
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgac 192  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  19027394 tactggcggaattttccctcagtaatgaagaggtggttttgac 19027436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 19027522 - 19027492
Alignment:
Q  145 aatattactggcggaattttccctcagtaat 175  Q
    |||||||||||||||||||||||||||||||    
T  19027522 aatattactggcggaattttccctcagtaat 19027492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 6161795 - 6161742
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||| |||||||||||||||||||||||  |||||| ||||| |||||    
T  6161795 ataaacattattggcggaattttccctcagtaatgcagaggtagttttcacaaa 6161742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 10030092 - 10030051
Alignment:
Q  205 tagttttgacaaagcattactgagggaataacccctcagtaa 246  Q
    ||||| |||||  |||||||||||||||||||||||||||||    
T  10030092 tagttctgacagcgcattactgagggaataacccctcagtaa 10030051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 32093296 - 32093227
Alignment:
Q  211 tgacaaagcattactgagggaataacccctcagtaattagtgacggacctattccgtcagtaattactga 280  Q
    ||||||||||||||||||||| ||  || |||||||||| |||| || | | ||||||||||||||||||    
T  32093296 tgacaaagcattactgagggattactccttcagtaattactgaccgaaccaatccgtcagtaattactga 32093227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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