View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10987_high_6 (Length: 251)

Name: NF10987_high_6
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10987_high_6
NF10987_high_6
[»] chr8 (7 HSPs)
chr8 (50-231)||(41381638-41381819)
chr8 (142-195)||(36339946-36339999)
chr8 (201-236)||(36339983-36340018)
chr8 (202-236)||(17506019-17506053)
chr8 (145-195)||(41381903-41381953)
chr8 (50-99)||(36339832-36339881)
chr8 (195-231)||(41381889-41381925)
[»] chr4 (16 HSPs)
chr4 (50-231)||(11910738-11910919)
chr4 (53-195)||(4887799-4887941)
chr4 (148-195)||(31982474-31982521)
chr4 (142-195)||(52631208-52631261)
chr4 (201-236)||(19752738-19752773)
chr4 (201-236)||(19787033-19787068)
chr4 (193-231)||(12387076-12387114)
chr4 (142-195)||(19752701-19752754)
chr4 (142-195)||(19787052-19787105)
chr4 (145-195)||(11910990-11911040)
chr4 (149-195)||(31982607-31982653)
chr4 (50-100)||(52631093-52631143)
chr4 (50-99)||(19752588-19752637)
chr4 (50-99)||(19787169-19787218)
chr4 (195-231)||(11910976-11911012)
chr4 (195-231)||(12386982-12387018)
[»] chr5 (7 HSPs)
chr5 (50-221)||(35046190-35046351)
chr5 (142-195)||(32243572-32243625)
chr5 (201-236)||(17131314-17131349)
chr5 (201-236)||(32243609-32243644)
chr5 (142-195)||(17131277-17131330)
chr5 (50-99)||(17131162-17131211)
chr5 (50-99)||(32243459-32243508)
[»] scaffold0179 (2 HSPs)
scaffold0179 (2-51)||(11640-11689)
scaffold0179 (2-51)||(23426-23475)
[»] chr2 (2 HSPs)
chr2 (148-195)||(27408219-27408266)
chr2 (148-196)||(20007714-20007762)
[»] scaffold0015 (3 HSPs)
scaffold0015 (142-195)||(63243-63296)
scaffold0015 (201-236)||(63224-63259)
scaffold0015 (50-99)||(63360-63409)
[»] chr7 (11 HSPs)
chr7 (142-195)||(35819271-35819324)
chr7 (148-196)||(37707258-37707306)
chr7 (201-236)||(21493795-21493830)
chr7 (148-195)||(29914676-29914723)
chr7 (201-236)||(35819308-35819343)
chr7 (149-195)||(21493765-21493811)
chr7 (201-236)||(26246956-26246991)
chr7 (149-195)||(26246926-26246972)
chr7 (50-99)||(21493912-21493961)
chr7 (50-94)||(4896559-4896603)
chr7 (143-175)||(4896676-4896708)
[»] chr1 (6 HSPs)
chr1 (150-192)||(19027394-19027436)
chr1 (204-236)||(28989898-28989930)
chr1 (201-236)||(6161723-6161758)
chr1 (145-175)||(19027492-19027522)
chr1 (202-236)||(28989815-28989849)
chr1 (142-195)||(6161742-6161795)
[»] chr3 (2 HSPs)
chr3 (143-194)||(35085331-35085382)
chr3 (195-236)||(35085311-35085352)
[»] scaffold0002 (1 HSPs)
scaffold0002 (202-236)||(294912-294946)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 41381638 - 41381819
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 149  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||    
T  41381638 atttgtgtttgattaattttatttctttatttatattaaataagtggaaaatgcattactgacagagtttttccttggtaatgtgattctccataaatat 41381737  T
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgaggga 231  Q
    || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  41381738 tattggcagaattttccgtcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagctttacggaggga 41381819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 36339946 - 36339999
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  36339946 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 36339999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 36339983 - 36340018
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  36339983 gaggtagttttgacaaagcattactgagggattatt 36340018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 17506053 - 17506019
Alignment:
Q  202 aggtagttttgacaaagcattactgagggattatt 236  Q
    |||||||| ||||||||||||||||||||||||||    
T  17506053 aggtagttctgacaaagcattactgagggattatt 17506019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 41381953 - 41381903
Alignment:
Q  145 aatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||| ||||||||||||||||||||   ||||| |||||||||||    
T  41381953 aatattactgacggaattttccctcagtaatgatgaggtagttttgacaaa 41381903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 36339832 - 36339881
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  36339832 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 36339881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 41381925 - 41381889
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgaggga 231  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  41381925 aatgatgaggtagttttgacaaagctttacggaggga 41381889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 11910738 - 11910919
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 149  Q
    |||||||||| ||||||||| |||||||| || |||   ||||||||||||||||||||| ||| |||||| || | |||||||| |||  |||||||||    
T  11910738 atttgtgtttaattaattttgtttctttaattttatcagaaaagtggaaaatgcattactgacaaaattttcccacagtaatgtggttcgccataaatat 11910837  T
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcattactgaggga 231  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11910838 tactggcggaattttccctcagtaatgtagaggtggttttgacaaaatggtgaggtagttttgacaaagcattactgaggga 11910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 4887941 - 4887799
Alignment:
Q  53 tgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatattac 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||    
T  4887941 tgtgtttgattaattttatttctttatttatattaaaaaagtggaaaatgcattactgacataatttttcctcggtaatgtgattctccataaatgttac 4887842  T
Q  153 tggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    || | ||||||||||||||||||  |||| | |||||||||||    
T  4887841 tgactgaattttccctcagtaatgaagagatagttttgacaaa 4887799  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 31982474 - 31982521
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  31982474 attactggcggaattttccctcagtaatgtaaaggtggttttgacaaa 31982521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 52631208 - 52631261
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  52631208 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 52631261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 19752738 - 19752773
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  19752738 gaggtagttttgacaaagcattactgagggattatt 19752773  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 19787068 - 19787033
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  19787068 gaggtagttttgacaaagcattactgagggattatt 19787033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 12387114 - 12387076
Alignment:
Q  193 aaaatgatgaggtagttttgacaaagcattactgaggga 231  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  12387114 aaaatggtgaggtagttttgacaaagcattactgaggga 12387076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 19752701 - 19752754
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||||||||||||||||| |||||||||  |||||| |||||||||||    
T  19752701 ataaacattactggcggaattttctctcagtaatgcagaggtagttttgacaaa 19752754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 19787105 - 19787052
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||||||||||||||||| |||||||||  |||||| |||||||||||    
T  19787105 ataaacattactggcggaattttctctcagtaatgcagaggtagttttgacaaa 19787052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 11911040 - 11910990
Alignment:
Q  145 aatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||| ||||||||||||||||||||  |||| | |||||||||||    
T  11911040 aatattactgacggaattttccctcagtaatgaagagatagttttgacaaa 11910990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 31982653 - 31982607
Alignment:
Q  149 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||| |||||||||||||| | ||| |||||||||||||    
T  31982653 ttactggcggaaatttccctcagtaatgttgagatggttttgacaaa 31982607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 52631093 - 52631143
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaa 100  Q
    |||||||||| || ||||||||||||||| ||| | |||||||||||||||    
T  52631093 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaaa 52631143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 19752588 - 19752637
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  19752588 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 19752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 19787218 - 19787169
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  19787218 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 19787169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 11911012 - 11910976
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgaggga 231  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  11911012 aatgaagagatagttttgacaaagcattactgaggga 11910976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 12386982 - 12387018
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgaggga 231  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  12386982 aatgaagagatagttttgacaaagcattactgaggga 12387018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 35046190 - 35046351
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaaatgcattactaacagaatttttcctcggtaatgtgattcttcataaatat 149  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |          ||||| |||||||||    
T  35046190 atttgtgtttgattaattttatttctttatttatattaaataagtggaaaatgcattactgacagaatttttctt----------attctccataaatat 35046279  T
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgacaaaatgatgaggtagttttgacaaagcat 221  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35046280 tactggcggaattttccctcaataatctagaggtggtttttacaaaatgatgaggtagttttgacaaagcat 35046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 32243572 - 32243625
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  32243572 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 32243625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 17131314 - 17131349
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  17131314 gaggtagttttgacaaagcattactgagggattatt 17131349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 32243609 - 32243644
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  32243609 gaggtagttttgacaaagcattactgagggattatt 32243644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 17131277 - 17131330
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||||||||||||| |||||||||||||  |||||| |||||||||||    
T  17131277 ataaacattactggcggaatattccctcagtaatgcagaggtagttttgacaaa 17131330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17131162 - 17131211
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  17131162 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 17131211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 32243459 - 32243508
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  32243459 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 32243508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11640 - 11689
Alignment:
Q  2 cctatgactgcaactcgatttcgtgtttgatatgcaactcgcgatttcat 51  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11640 cctatgactgcaactcgatttcgtgttcaatatgcaactcgcgatttcat 11689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 23475 - 23426
Alignment:
Q  2 cctatgactgcaactcgatttcgtgtttgatatgcaactcgcgatttcat 51  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23475 cctatgactgcaactcgatttcgtgttctatatgcaactcgcgatttcat 23426  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 27408266 - 27408219
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  27408266 attactggcggaattttccctcagtaatgtaaaggtggttttgacaaa 27408219  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 20007714 - 20007762
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaaa 196  Q
    |||||||| |||| |||| |||||||||  |||||||||||||||||||    
T  20007714 attactggtggaaatttctctcagtaatgaagaggtggttttgacaaaa 20007762  T

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Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 63296 - 63243
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  63296 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 63243  T

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Target: scaffold0015; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 63259 - 63224
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  63259 gaggtagttttgacaaagcattactgagggattatt 63224  T

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Target: scaffold0015; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 63409 - 63360
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  63409 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 63360  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 35819271 - 35819324
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| ||||||||||||||||||||||||||||  |||||| |||||||||||    
T  35819271 ataaacattactggcggaattttccctcagtaatgcagaggtagttttgacaaa 35819324  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 37707258 - 37707306
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaaa 196  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  37707258 attactggcggaattttccatcagtaatgaagaggtggttttgacaaaa 37707306  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 21493795 - 21493830
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  21493795 gaggtagttttgacaaagcattactgagggattatt 21493830  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 29914723 - 29914676
Alignment:
Q  148 attactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||    
T  29914723 attactggcggaatttttcctcagtaatgtaaaggtggttttgacaaa 29914676  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 35819308 - 35819343
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  35819308 gaggtagttttgacaaagcattactgagggattatt 35819343  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 21493765 - 21493811
Alignment:
Q  149 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||    
T  21493765 ttactggcggaattttccctcagtaatggagaggtagttttgacaaa 21493811  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 26246956 - 26246991
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||||||||||||| ||||||||    
T  26246956 gaggtagttttgacaaagcattactgatggattatt 26246991  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 26246926 - 26246972
Alignment:
Q  149 ttactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||    
T  26246926 ttactggcggaatttttcctcagtaatagagaggtagttttgacaaa 26246972  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 21493961 - 21493912
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagtggaaa 99  Q
    |||||||||| || ||||||||||||||| ||| | ||||||||||||||    
T  21493961 atttgtgtttaataaattttatttctttaattaaaattaaaaagtggaaa 21493912  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 4896559 - 4896603
Alignment:
Q  50 atttgtgtttgattaattttatttctttatttatatttaaaaagt 94  Q
    |||||||||| |||||||||||||||||| ||| | |||||||||    
T  4896559 atttgtgtttaattaattttatttctttaattaaaattaaaaagt 4896603  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 4896676 - 4896708
Alignment:
Q  143 taaatattactggcggaattttccctcagtaat 175  Q
    |||| ||||||||||||||||||||||||||||    
T  4896676 taaacattactggcggaattttccctcagtaat 4896708  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 19027394 - 19027436
Alignment:
Q  150 tactggcggaattttccctcagtaatctagaggtggttttgac 192  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  19027394 tactggcggaattttccctcagtaatgaagaggtggttttgac 19027436  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 28989930 - 28989898
Alignment:
Q  204 gtagttttgacaaagcattactgagggattatt 236  Q
    |||||||||||||||||||||||||||||||||    
T  28989930 gtagttttgacaaagcattactgagggattatt 28989898  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 6161758 - 6161723
Alignment:
Q  201 gaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6161758 gaggtagttttcacaaagcattactgagggattatt 6161723  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 19027522 - 19027492
Alignment:
Q  145 aatattactggcggaattttccctcagtaat 175  Q
    |||||||||||||||||||||||||||||||    
T  19027522 aatattactggcggaattttccctcagtaat 19027492  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 28989815 - 28989849
Alignment:
Q  202 aggtagttttgacaaagcattactgagggattatt 236  Q
    ||||||||||||||||| |||||||||||||||||    
T  28989815 aggtagttttgacaaaggattactgagggattatt 28989849  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 6161795 - 6161742
Alignment:
Q  142 ataaatattactggcggaattttccctcagtaatctagaggtggttttgacaaa 195  Q
    ||||| |||| |||||||||||||||||||||||  |||||| ||||| |||||    
T  6161795 ataaacattattggcggaattttccctcagtaatgcagaggtagttttcacaaa 6161742  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 35085382 - 35085331
Alignment:
Q  143 taaatattactggcggaattttccctcagtaatctagaggtggttttgacaa 194  Q
    |||| |||||| ||||||||||||||| |||||  |||||||||||||||||    
T  35085382 taaacattactagcggaattttccctcggtaatgaagaggtggttttgacaa 35085331  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 35085352 - 35085311
Alignment:
Q  195 aatgatgaggtagttttgacaaagcattactgagggattatt 236  Q
    ||||| ||||| |||||||||| |||||||||||||||||||    
T  35085352 aatgaagaggtggttttgacaatgcattactgagggattatt 35085311  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 294946 - 294912
Alignment:
Q  202 aggtagttttgacaaagcattactgagggattatt 236  Q
    |||||||| ||||||||||||||||||||||||||    
T  294946 aggtagttctgacaaagcattactgagggattatt 294912  T

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