View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10987_low_1 (Length: 782)

Name: NF10987_low_1
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10987_low_1
NF10987_low_1
[»] chr2 (1 HSPs)
chr2 (420-765)||(274714-275055)
[»] chr3 (8 HSPs)
chr3 (227-387)||(5565257-5565417)
chr3 (85-218)||(5565170-5565302)
chr3 (185-301)||(31896518-31896633)
chr3 (103-183)||(14175288-14175364)
chr3 (185-301)||(31945875-31945990)
chr3 (274-319)||(13539573-13539618)
chr3 (185-301)||(31912227-31912342)
chr3 (110-147)||(13539487-13539524)
[»] chr8 (1 HSPs)
chr8 (47-144)||(43618600-43618697)
[»] chr7 (1 HSPs)
chr7 (95-147)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (87-148)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-196)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (202-301)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (202-301)||(27444516-27444614)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 420 - 765
Target Start/End: Original strand, 274714 - 275055
Alignment:
Q  420 acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttctaatcattcatttacttctacaaattgtatgtaatctttaccta 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     || ||||||| ||||||| ||| ||     
T  274714 acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttccaatcattcatttg----tataaattgtttgtaatccttatctg 274809  T
Q  520 cttactacttcggaaggannnnnnnngttactccagcattgatgtgggaagtttttctggtgtttataattatctctcagatgatatacaagttgagagg 619  Q
    ||| ||||||| | ||||        ||||||||||||||||||||||||| | ||| |||||||||||||||||||  |||||| |||| |||||||||    
T  274810 cttgctacttctggaggattttttttgttactccagcattgatgtgggaagctgttccggtgtttataattatctcttggatgatgtacaggttgagagg 274909  T
Q  620 gtggtcaaggaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaaccaggcagactctgttgtctaccagactgaga 719  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |    
T  274910 atggtcaatgaggctgagagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaatcaggcggactctgttgtctaccagactgaaa 275009  T
Q  720 agcaattgaaagagctgggagaaaaggtacccgactctgtgaaaga 765  Q
    |||||||||||||||| |||||||||||||| | | ||||||||||    
T  275010 agcaattgaaagagctaggagaaaaggtacctggccctgtgaaaga 275055  T

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Target: chr3 (Bit Score: 93; Significance: 7e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 227 - 387
Target Start/End: Original strand, 5565257 - 5565417
Alignment:
Q  227 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaaggttaattgttat 326  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||| ||| || ||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  327 tttcagttttcgtattcctcatttctaatactgaatcattcgttgattatgatctttgttt 387  Q
    |||| | ||| |||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgatgttgatctttgttt 5565417  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  85 ttttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccac 184  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  185 catcgttgaccatcgcatcggaatttgctcttca 218  Q
    | ||||||||||  || |||||||| ||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  185 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 284  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  103 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcacca 183  Q
    ||||||||||||||||   |||||||| ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctacaaaa-cccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  185 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 284  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 13539573 - 13539618
Alignment:
Q  274 cgcgtcggggtcgctgtcagaagcttcttttattttgcaaggttaa 319  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||    
T  13539573 cgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  185 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 284  Q
    |||||||||||| ||| ||||||| ||||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  285 cgctgtcagaagcttct 301  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 13539487 - 13539524
Alignment:
Q  110 aaaagcatcatcgtcttcatctcttcatcctctacaaa 147  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctctgcaaa 13539524  T

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Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 43618697 - 43618600
Alignment:
Q  47 acacaaaaactcttcttcttattccctcatttcgttaattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctac 144  Q
    |||||||||| ||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcttctac 43618600  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 7854246 - 7854298
Alignment:
Q  95 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctgcaaa 7854298  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 31952963 - 31952902
Alignment:
Q  87 ttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaa 148  Q
    |||| |||| ||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  31952963 ttttggcctcctcccactaaaataaagccatcatcatcttcatctcttcatcctctacaaaa 31952902  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  118 catcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccaccatcgttgacca 196  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||| ||||| |||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  202 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttct 301  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| | | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  202 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttct 301  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| | | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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