View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10987_low_10 (Length: 221)
Name: NF10987_low_10
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10987_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 35941467 - 35941279
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35941467 |
agaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
35941368 |
T |
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| Q |
118 |
tctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcctatg |
206 |
Q |
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| T |
35941367 |
tctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcttatg |
35941279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 35922602 - 35922414
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
117 |
Q |
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| T |
35922602 |
agaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
35922503 |
T |
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| Q |
118 |
tctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcctatg |
206 |
Q |
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| T |
35922502 |
tctgtctagaaaatctcagaatcctcccaagacactttcttgggaagagggagatgcattgaaaacacattctttttctgctgcttatg |
35922414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 35916336 - 35916145
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttattactcaacttgagc---cttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916336 |
agaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtt |
35916237 |
T |
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| Q |
115 |
tattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcctatg |
206 |
Q |
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|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || || ||| ||||| |||| |
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| T |
35916236 |
tattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagggagatgcattgaaaacacattctttttctgctgcttatg |
35916145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 35935911 - 35935729
Alignment:
| Q |
24 |
tttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttc |
123 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||| || |
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| T |
35935911 |
tttctctttatgcttgtttattactcaacttgagtctcttggttatttttccttatagcaaagctagtcaagctgataaacttgatgagctttttctgtc |
35935812 |
T |
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| Q |
124 |
tagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcctatg |
206 |
Q |
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| T |
35935811 |
tagaaaatcacagaatcctcccaagactctttcttgggaagagggagaagcattgaaaacactttcttcttctgctgcttatg |
35935729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 35911946 - 35911779
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
35911946 |
agaaggtttctctttatgcttgtttactactcaacttgagtctattggttatttttccatattgcaaagctagtcaagctgataaacttgttgagtttat |
35911847 |
T |
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| Q |
118 |
tctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacac |
185 |
Q |
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||| ||||||| || ||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
35911846 |
tctgtctagaacctcacagaatcctcctaagactctttcatgggaagaggaagatgcattgaaaacac |
35911779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 35929274 - 35929116
Alignment:
| Q |
18 |
agaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttat |
117 |
Q |
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|||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
35929274 |
agaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttat |
35929175 |
T |
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| Q |
118 |
tctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcat |
176 |
Q |
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||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35929174 |
tctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcat |
35929116 |
T |
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