View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10987_low_4 (Length: 295)
Name: NF10987_low_4
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10987_low_4 |
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| [»] scaffold0259 (1 HSPs) |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 17527924 - 17528082
Alignment:
| Q |
112 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatccgc |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17527924 |
tgtgtgggaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatcggt |
17528023 |
T |
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| Q |
212 |
gnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt |
270 |
Q |
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| T |
17528024 |
gaaaaaaaatcaaattgcattacattactggcggatttgatttcaatactgacggattt |
17528082 |
T |
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Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 41378982 - 41378825
Alignment:
| Q |
112 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatccgc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41378982 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatcggt |
41378883 |
T |
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| Q |
212 |
gnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt |
270 |
Q |
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| T |
41378882 |
g-aaaaaaatcaaattgcattacattactgacggatttgatttcaatactgacggattt |
41378825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 7737 - 7580
Alignment:
| Q |
112 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtatccgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
7737 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtaaagaattgttttagagagatgatgtttgttgtgaatgagagctactgagaaggagtat-cac |
7639 |
T |
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| Q |
212 |
gnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt |
270 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7638 |
tggaaaaaatcaaattgcattacattactggcggatttgatttcaatactgacggattt |
7580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 23492 - 23608
Alignment:
| Q |
3 |
aatggagtgtggtggtgtgaaatcgtatatgagtctggaatatgagaggag-agagaaattaggttagagagaagtgtgtaattggattgtgggagagat |
101 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23492 |
aatggagtgtggtggtgtgaaatcgtgtatgagtctggaatatgagaggaggagagaaattaggttagagaaaagtgtgtaattggattgtgggagagat |
23591 |
T |
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| Q |
102 |
aaatgtgtggtgtgtgg |
118 |
Q |
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|||||||||| |||||| |
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| T |
23592 |
aaatgtgtggcgtgtgg |
23608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 11623 - 11514
Alignment:
| Q |
3 |
aatggagtgtggtggtgtgaaatcgtatatgagtctggaatatgagaggag-agagaaattaggttagagagaagtgtgtaattggattgtgggagagat |
101 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
11623 |
aatggagtgtggtggtgtgaaatcgtgtatgagtctggaatatgagaggaggagagaaattaggttagagaaaattgtgtaattggattgtgggagagat |
11524 |
T |
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| Q |
102 |
aaatgtgtgg |
111 |
Q |
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|||||||||| |
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| T |
11523 |
aaatgtgtgg |
11514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 31392766 - 31392925
Alignment:
| Q |
112 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagaga--gatgatgtttgttgtgaatgaga-gctactgagaaggagtatc |
208 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
31392766 |
tgtgtggaaaaatgttgaagaaatttaataacatggtagagaattgtttgagagatgaatgatgtttgctgtgaatgagaggctactgagaaagagtatc |
31392865 |
T |
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| Q |
209 |
cgcgnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt |
270 |
Q |
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| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31392866 |
ggtg--aaaaaatcaaattgcattacattactggcggatttggtttaaatactgacggattt |
31392925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 37440922 - 37440838
Alignment:
| Q |
112 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagagagatgatgtttgttgtgaatgagagctactg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
37440922 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgtttttgagagatgatgtttgttgtgaattagagctactg |
37440838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 41073949 - 41073790
Alignment:
| Q |
112 |
tgtgtggaaaaatgttgaagaaatttagtaagatggtagagaattgttttagaga--gatgatgtttgttgtgaatgaga-gctactgagaaggagtatc |
208 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
41073949 |
tgtgtggaaaaatgttgaagaaatttaataacatggtagagaattgtttgagagatgaatgatgtttgctgtgaatgagaggctactgagaaagagtatc |
41073850 |
T |
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| Q |
209 |
cgcgnnnnnnnntcaaattgcattacattactggcggatttggtttcaatactgacggattt |
270 |
Q |
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| | | | |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41073849 |
ggtg--aaaaaataagattgcattacattactggcggatttggtttaaatactgacggattt |
41073790 |
T |
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