View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10987_low_8 (Length: 228)
Name: NF10987_low_8
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10987_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 16471153 - 16471010
Alignment:
| Q |
7 |
gctttcacatttagagaactcatcagacaataagaattttaagctaaccnnnnnnnnnnnnnnnnnnnnnnngttgtttctattttaagctaattaatgt |
106 |
Q |
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| T |
16471153 |
gctttcacatttagagaactcatcagacaataagaattttaagctaaccaaaaagaagaaaaagaaaaaaaagttgtttctattttaagctaattaatgt |
16471054 |
T |
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| Q |
107 |
actagttttctgaggaatcaattgtcaattgtgactattagtgg |
150 |
Q |
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| T |
16471053 |
actagttttctgaggaatcaattgtcaattgtgactattggtgg |
16471010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 16464056 - 16464011
Alignment:
| Q |
79 |
gttgtttctattttaagctaattaatgtactagttttctgaggaat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16464056 |
gttgtttctattttaagctaattaatgtactagttttctgaggaat |
16464011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 16464131 - 16464093
Alignment:
| Q |
7 |
gctttcacatttagagaactcatcagacaataagaattt |
45 |
Q |
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||||||||||||||||||||||||| ||||||| ||||| |
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| T |
16464131 |
gctttcacatttagagaactcatcaaacaataataattt |
16464093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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