View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10987_low_9 (Length: 226)

Name: NF10987_low_9
Description: NF10987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10987_low_9
NF10987_low_9
[»] chr3 (2 HSPs)
chr3 (17-216)||(11528668-11528867)
chr3 (96-216)||(39713060-39713183)
[»] chr2 (5 HSPs)
chr2 (79-216)||(37952059-37952202)
chr2 (140-216)||(37957861-37957937)
chr2 (140-203)||(28166921-28166984)
chr2 (140-203)||(44905766-44905829)
chr2 (142-216)||(37897253-37897327)
[»] chr4 (2 HSPs)
chr4 (102-203)||(34539383-34539487)
chr4 (140-203)||(11148748-11148811)
[»] chr7 (1 HSPs)
chr7 (102-203)||(38757902-38758006)
[»] chr1 (1 HSPs)
chr1 (102-195)||(13223286-13223382)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 11528867 - 11528668
Alignment:
Q  17 aatctaaaagggccttaaagatgtataaattgcttctaccagataccttctccccatccatcagatttaacaaatggcacataaacttattgagcaaact 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11528867 aatctaaaagggccttaaagatgtataaattgcttctactagataccttctccccatccatcagatttaacaaatggcacataaacttattgagcaaact 11528768  T
Q  117 cttgttgtgccagcaacaacaaaaacaacaacttctcttcctctcacattcctcgacttgcattttgctggtccagtctacgttaaacgcctatgcttct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  11528767 cttgttgtgccagcaacaacaaaaacaacaacttctcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttct 11528668  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 39713183 - 39713060
Alignment:
Q  96 cataaacttattgagcaaactcttgttgtgccagcaac---aacaaaaacaacaacttctcttcctctcacattcctcgacttgcattttgctggtccag 192  Q
    ||||||||||||||||||||||||||  | || |||||   ||||  |||||| |||| ||||||||||||||| || |||||||||||||||||||||     
T  39713183 cataaacttattgagcaaactcttgtgtttcctgcaacaagaacagcaacaactacttatcttcctctcacatttcttgacttgcattttgctggtccaa 39713084  T
Q  193 tctacgttaaacgcctatgcttct 216  Q
    |||||| ||||||| ||| |||||    
T  39713083 tctacgctaaacgcttattcttct 39713060  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 37952059 - 37952202
Alignment:
Q  79 agatttaacaaatggca---cataaacttattgagcaaactcttgttgtgccagcaacaacaaaaaca---acaacttctcttcctctcacattcctcga 172  Q
    |||||| ||||||||||   ||||| ||||||||||||||| ||||| | ||| ||||| ||| ||||   ||||||| |||||||||||||||||||||    
T  37952059 agatttcacaaatggcaaatcataagcttattgagcaaactgttgtttttccatcaacaccaagaacaacaacaacttttcttcctctcacattcctcga 37952158  T
Q  173 cttgcattttgctggtccagtctacgttaaacgcctatgcttct 216  Q
    ||||| |||||| ||||||||||| ||| ||||| ||| |||||    
T  37952159 cttgccttttgcaggtccagtctatgttgaacgcttattcttct 37952202  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 37957861 - 37957937
Alignment:
Q  140 aacaacaacttctcttcctctcacattcctcgacttgcattttgctggtccagtctacgttaaacgcctatgcttct 216  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||| ||||| ||| |||||    
T  37957861 aacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttct 37957937  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 28166984 - 28166921
Alignment:
Q  140 aacaacaacttctcttcctctcacattcctcgacttgcattttgctggtccagtctacgttaaa 203  Q
    ||||||||||| ||||||| |||||||  | ||||||||||||||||||||||||||| |||||    
T  28166984 aacaacaacttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaa 28166921  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 44905829 - 44905766
Alignment:
Q  140 aacaacaacttctcttcctctcacattcctcgacttgcattttgctggtccagtctacgttaaa 203  Q
    ||||||||||| |||||||||||||||  | |||| ||||||||||| ||||||||||||||||    
T  44905829 aacaacaacttatcttcctctcacattttttgactagcattttgctgatccagtctacgttaaa 44905766  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 37897327 - 37897253
Alignment:
Q  142 caacaacttctcttcctctcacattcctcgacttgcattttgctggtccagtctacgttaaacgcctatgcttct 216  Q
    |||||| ||||||||||||||||||||| ||||||| ||| ||||||||| |||| |||| ||||| || |||||    
T  37897327 caacaatttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttct 37897253  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 34539487 - 34539383
Alignment:
Q  102 cttattgagcaaactcttgttgtgccagcaacaacaaaaacaacaac---ttctcttcctctcacattcctcgacttgcattttgctggtccagtctacg 198  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||   || ||||||||||| |||  | ||||||||||||||||||||| |||||     
T  34539487 cttattgagcaaactcttgtttttcgagcaacaacaaaaacaacaacaacttatcttcctctcatattttttgacttgcattttgctggtccaatctaca 34539388  T
Q  199 ttaaa 203  Q
    |||||    
T  34539387 ttaaa 34539383  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 11148748 - 11148811
Alignment:
Q  140 aacaacaacttctcttcctctcacattcctcgacttgcattttgctggtccagtctacgttaaa 203  Q
    ||||||||||| |||||||||||||||  | ||||||||||||| |||||||||||||||||||    
T  11148748 aacaacaacttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaa 11148811  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 38758006 - 38757902
Alignment:
Q  102 cttattgagcaaactcttgttgtgccagcaacaacaaaaacaacaac---ttctcttcctctcacattcctcgacttgcattttgctggtccagtctacg 198  Q
    |||||||||||| |||||||| |   |||||||||||||||||||||   || ||||||||| |||||  | | ||||||||||| ||||||||||||||    
T  38758006 cttattgagcaagctcttgttttttgagcaacaacaaaaacaacaacaacttatcttcctctaacattttttgccttgcattttgttggtccagtctacg 38757907  T
Q  199 ttaaa 203  Q
    |||||    
T  38757906 ttaaa 38757902  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 13223286 - 13223382
Alignment:
Q  102 cttattgagcaaactcttgttgtgccagcaacaacaaaaaca---acaacttctcttcctctcacattcctcgacttgcattttgctggtccagtct 195  Q
    ||||||||||||||||||||| | | |||||||||| |||||   ||||||| ||||||||||| |||  |  ||||||||||||||||||||||||    
T  13223286 cttattgagcaaactcttgtttttcgagcaacaacacaaacaacaacaacttatcttcctctcaaatttttttacttgcattttgctggtccagtct 13223382  T

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