View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10988_high_7 (Length: 243)

Name: NF10988_high_7
Description: NF10988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10988_high_7
NF10988_high_7
[»] chr3 (12 HSPs)
chr3 (25-243)||(9019312-9019530)
chr3 (36-147)||(9108829-9108940)
chr3 (25-185)||(8746978-8747138)
chr3 (25-141)||(8755605-8755721)
chr3 (25-177)||(9023474-9023626)
chr3 (36-147)||(9034655-9034766)
chr3 (25-179)||(9101252-9101406)
chr3 (36-184)||(9029148-9029297)
chr3 (69-185)||(9026222-9026338)
chr3 (25-146)||(8962585-8962706)
chr3 (68-143)||(8965343-8965418)
chr3 (68-141)||(8957188-8957261)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 9019312 - 9019530
Alignment:
Q  25 gtccctcgtccgctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgct 124  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  9019312 gtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggagcttcaattgtgttgtcaatgct 9019411  T
Q  125 tgccatcttgaagaactgaaaacctcatgaacccactaattttctggtggatttcgtggaaacaaagaaaatgaacacaactcaaagatagtcgttattg 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9019412 tgccatcttgaagaactgaaaacatcatgaacccactaattttctggtggatttcgtggaaacaaagaaaatgaacacaactcaaagatagtcgttattg 9019511  T
Q  225 ttgattattttgagttgat 243  Q
    ||||||||| |||||||||    
T  9019512 ttgattattatgagttgat 9019530  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 9108829 - 9108940
Alignment:
Q  36 gctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgcttgccatcttga 135  Q
    ||||| ||| |||||||||||||||| |||  |||||||||||| |||||||| || ||||||||||||||| |||| ||||| ||||||||  ||||||    
T  9108829 gctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttga 9108928  T
Q  136 agaactgaaaac 147  Q
    |||||| |||||    
T  9108929 agaactaaaaac 9108940  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 8746978 - 8747138
Alignment:
Q  25 gtccctcgtccgctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgct 124  Q
    |||||||||  ||||| ||||||||||||||||| || |||   ||||||||||| | |||||| |||||||| |||| |||| |||||||||| |||||    
T  8746978 gtccctcgttggctccagcaccaggtcctgatgttggagctgttggatctgttacaaattcagtggctatgattggagtttcaattgtgttgtcaatgct 8747077  T
Q  125 tgccatcttgaagaactgaaaacctcatgaacccactaattttctggtggatttcgtggaa 185  Q
     |||||||| ||| ||| ||||  | ||||  ||||| ||||||| ||||||||| |||||    
T  8747078 cgccatcttcaagcactaaaaaaatgatgattccactcattttcttgtggatttcatggaa 8747138  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 8755605 - 8755721
Alignment:
Q  25 gtccctcgtccgctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgct 124  Q
    |||||||||  ||||||||||||| |||||||| ||| |||   ||||||||||| | ||||||||||||||| ||||||||  || | ||||| |||||    
T  8755605 gtccctcgttggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgct 8755704  T
Q  125 tgccatcttgaagaact 141  Q
     |||||||| |||||||    
T  8755705 cgccatcttcaagaact 8755721  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 9023474 - 9023626
Alignment:
Q  25 gtccctcgtccgctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgct 124  Q
    |||||||||  ||||||||||||||||||||||  || |||   ||||||||||| |||||||| |||||| |||||  |||  |||| ||||| |||||    
T  9023474 gtccctcgttggctccggcaccaggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaatttcggttgtattgtcaatgct 9023573  T
Q  125 tgccatcttgaagaactgaaaacctcatgaacccactaattttctggtggatt 177  Q
     |||||||| ||| ||| ||||| | ||||  ||||| ||||||| |||||||    
T  9023574 cgccatcttcaagcactaaaaacatgatgattccactcattttcttgtggatt 9023626  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 9034655 - 9034766
Alignment:
Q  36 gctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgcttgccatcttga 135  Q
    ||||||||||||||||||||||  || |||   ||||||||| | ||||| || ||||||||||||| |||| |||||||||| ||||| |||||||| |    
T  9034655 gctccggcaccaggtcctgatgctggagctgctggatctgttgcaagttcggtggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttca 9034754  T
Q  136 agaactgaaaac 147  Q
    || ||| |||||    
T  9034755 agcactaaaaac 9034766  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 9101252 - 9101406
Alignment:
Q  25 gtccctcgtccgctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgct 124  Q
    |||||||||  ||||| |||||||| |||||||  || |||   || |||||||| |||||||| ||||||||||||| |||| |||| ||||| |||||    
T  9101252 gtccctcgttggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgct 9101351  T
Q  125 tgccatcttgaagaactgaaaacctcatgaacccactaattttctggtggatttc 179  Q
     |||||||| ||| ||| ||||| | ||||   |||| ||||||| |||||||||    
T  9101352 cgccatctttaagcactaaaaacatgatgattgcacttattttcttgtggatttc 9101406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 9029148 - 9029297
Alignment:
Q  36 gctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgcttgccatcttga 135  Q
    ||||| ||||||||||||||||  || |||   |||||| |||| |||||||  ||||||||||||| |||| |||||||||| ||||| |||||||| |    
T  9029148 gctccagcaccaggtcctgatgctggagctgctggatctattacaagttcagcggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttca 9029247  T
Q  136 agaactgaaaacctcat-gaacccactaattttctggtggatttcgtgga 184  Q
    || ||| ||||| | || ||  ||||| ||||||| ||||||||| ||||    
T  9029248 agcactaaaaacatgatggattccacttattttcttgtggatttcatgga 9029297  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 9026222 - 9026338
Alignment:
Q  69 ggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgcttgccatcttgaagaactgaaaacctcatgaacccactaattttc 168  Q
    ||||||||||| |||||||| || |||||||||| |||| |||| ||||| ||| | |||||||| ||  ||| ||||| | ||||  ||||| ||||||    
T  9026222 ggatctgttacaagttcagtggcaatgatcggagtttcagttgtattgtcaatgatcgccatcttcaaacactaaaaacataatgattccacttattttc 9026321  T
Q  169 tggtggatttcgtggaa 185  Q
    | ||||||||| |||||    
T  9026322 ttgtggatttcatggaa 9026338  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 8962585 - 8962706
Alignment:
Q  25 gtccctcgtccgctccggcaccaggtcctgatgtcggggcttgcggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgct 124  Q
    |||||||||  ||||| ||||||||||||||||  || | |  |||||||||| |  |||| || |||||||||||||||||| ||||| | || |||||    
T  8962585 gtccctcgttagctccagcaccaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaattgtgctttcaatgct 8962684  T
Q  125 tgccatcttgaagaactgaaaa 146  Q
     || ||||| ||||| ||||||    
T  8962685 cgctatcttcaagaattgaaaa 8962706  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 8965343 - 8965418
Alignment:
Q  68 cggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgcttgccatcttgaagaactga 143  Q
    |||||||||||| |||||  | || ||||||||||||||| ||||| |||| ||||| || ||||| |||||||||    
T  8965343 cggatctgttacaagttctatggcaatgatcggagcttcaattgtgctgtcaatgctcgcaatcttcaagaactga 8965418  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 8957188 - 8957261
Alignment:
Q  68 cggatctgttacgagttcagttgctatgatcggagcttcacttgtgttgtcgatgcttgccatcttgaagaact 141  Q
    ||||| |||||| ||||| || |||||||||||||||||| ||||| |||| ||| | ||||| || |||||||    
T  8957188 cggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcgccattttcaagaact 8957261  T

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