View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10988_low_1 (Length: 600)
Name: NF10988_low_1
Description: NF10988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10988_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 32 - 589
Target Start/End: Original strand, 5620410 - 5620976
Alignment:
| Q |
32 |
ttctagagaagaattattggttgatggagaatcttcacatgccaaatttctgaaatgagctcaatacattatttaagtgaaaaatttggattacagtctg |
131 |
Q |
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||||| ||||| |||||||||||||| || || ||| | || |||||||||| |||||||||||| ||| |||||||||||| ||| | ||||||||||| |
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| T |
5620410 |
ttctaaagaagtattattggttgatgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacattagaattacagtctg |
5620509 |
T |
|
| Q |
132 |
aactctggacagataaatgacatgaacagctcatagattttgtaagttaaacagcaggttattctgaaaaaacagcaaattatcttttttgcttactcct |
231 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620510 |
gactctggacagataaatgacatgatcagctcatagtttttgtaagttaaacagtaggttattctgaaaaaacagcaaattatcttttttgcttactcct |
5620609 |
T |
|
| Q |
232 |
gataaggaggtagtatttcttatgcagtgctgctgggccacataccatagttaatggtgaagaagttgtaaattttgcttcagcaaactatcttgggctt |
331 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620610 |
gataaggaggta---tttcttatgcagtgctgctgggccacataccatagttaatggtaaagaagttgtaaattttgcttcagcaaactatcttgggctt |
5620706 |
T |
|
| Q |
332 |
ataggtcatcaaaagttacttgtaagttgtaaggaaatgatcccatatcaataaagtctttttgttgggagtgttctgatgc------------tttact |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
5620707 |
ataggtcatcaaaagttacttgtaagttgtaaggaaatgatcccatatcaataaagtctttttgttgggagtggtctgatgcagtgactctatatttact |
5620806 |
T |
|
| Q |
420 |
ttgtcttgtaggactcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggcttgatctta |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620807 |
ttgtcttgtaggactcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggcttgatctta |
5620906 |
T |
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| Q |
520 |
aggtttgtttttgaggaaatacttgttccctttaccttatgatgcttttcttcttccgagatgtccatct |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5620907 |
aggtttgtttttgaggaaatacttgttccctttaccttatgatgcttttcttcttcccagatgtccatct |
5620976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 246 - 539
Target Start/End: Complemental strand, 30636114 - 30635814
Alignment:
| Q |
246 |
atttcttatgcagtgctgctgggccacataccatagttaatggtgaagaagttgtaaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
345 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30636114 |
atttcttatgcagtgctgctggcccacataccatagttaatggtaaagaagttatcaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
30636015 |
T |
|
| Q |
346 |
gttacttgtaagttgtaaggaaatgatcccatatcaataaagtctttttgttg-ggagtgtt--------ctgatgc----tttactttgtcttgtagga |
432 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||| ||||||| ||| |||| | |||| | |||||||| | |||||||| |
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| T |
30636014 |
gttacttg-------taaggacatgatcccatatcaataaattctttttcttgaccagtgcttcagtacactgaatctatatttactttatattgtagga |
30635922 |
T |
|
| Q |
433 |
ctcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggc-ttgatcttaaggtttgttttt |
531 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| |||||||||| |
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| T |
30635921 |
ctcatgcacttctgctttagagaaatatggtgttggttcatgtggcccccgtggattttatggaacaattggtaaggctttaatattaaagtttgttttt |
30635822 |
T |
|
| Q |
532 |
gaggaaat |
539 |
Q |
| |
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|||||||| |
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|
| T |
30635821 |
gaggaaat |
30635814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 30636231 - 30636142
Alignment:
| Q |
119 |
ggattacagtctgaactctggacagataaatgacatgaacagctcatagattttgtaagttaaacagcaggttattctgaaaaaacagcaaattatc |
215 |
Q |
| |
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|||||||||| || ||||| |||||||||||||||||| ||||||| | | |||||||||||||| |||| |||||||||||| ||||||| |
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| T |
30636231 |
ggattacagtttgcactctagacagataaatgacatgataagctcat--aatatgtaagttaaacag-----tattgtgaaaaaacagccaattatc |
30636142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 246 - 539
Target Start/End: Complemental strand, 21424914 - 21424614
Alignment:
| Q |
246 |
atttcttatgcagtgctgctgggccacataccatagttaatggtgaagaagttgtaaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
345 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21424914 |
atttcttatgcagtgctgctggccctcataccatagttaatggtaaagaagttatcaattttgcttcagcaaactatcttgggcttataggtcatcaaaa |
21424815 |
T |
|
| Q |
346 |
gttacttgtaagttgtaaggaaatgatcccatatcaataaagtctttttgttg-ggagtgtt--------ctgatgc----tttactttgtcttgtagga |
432 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||| ||||||| ||| |||| | |||| | |||||||| | |||||||| |
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|
| T |
21424814 |
gttacttg-------taaggacatgatctcatatcaataaattctttttcttgaccagtgcttcagtacactgaatctatatttactttatattgtagga |
21424722 |
T |
|
| Q |
433 |
ctcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggc-ttgatcttaaggtttgttttt |
531 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| |||||||||| |
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| T |
21424721 |
ctcatgcacttctgctttagagaaatatggtgttggttcatgtggcccccgtggattttatggaacaattggtaaggctttaatattaaagtttgttttt |
21424622 |
T |
|
| Q |
532 |
gaggaaat |
539 |
Q |
| |
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|||||||| |
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|
| T |
21424621 |
gaggaaat |
21424614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 21425033 - 21424942
Alignment:
| Q |
119 |
ggattacagtctgaactctggacagataaatgacatgaacagctcatagattttgtaagttaaacagcaggttattctgaaaaaacagcaaattatc |
215 |
Q |
| |
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|||||||||| || ||||| |||||||||||||||||| |||||||| | |||||||||||||| |||| |||||||||||| ||||||| |
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| T |
21425033 |
ggattacagtttgcactctagacagataaatgacatgataagctcataatatatgtaagttaaacag-----tattgtgaaaaaacagccaattatc |
21424942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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