View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10988_low_2 (Length: 502)

Name: NF10988_low_2
Description: NF10988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10988_low_2
NF10988_low_2
[»] chr2 (3 HSPs)
chr2 (18-473)||(37844803-37845258)
chr2 (388-429)||(33197360-33197401)
chr2 (383-435)||(28803621-28803673)
[»] chr7 (2 HSPs)
chr7 (383-441)||(1431417-1431475)
chr7 (385-429)||(27481415-27481459)
[»] chr8 (4 HSPs)
chr8 (432-466)||(10923604-10923638)
chr8 (383-415)||(6950239-6950271)
chr8 (432-472)||(26473780-26473820)
chr8 (389-429)||(31875680-31875720)
[»] chr5 (2 HSPs)
chr5 (383-429)||(20982256-20982302)
chr5 (383-435)||(6739775-6739827)
[»] chr4 (2 HSPs)
chr4 (381-435)||(24936212-24936265)
chr4 (388-436)||(24193493-24193541)
[»] chr3 (1 HSPs)
chr3 (387-429)||(29094288-29094330)
[»] chr1 (2 HSPs)
chr1 (383-428)||(24263261-24263306)
chr1 (432-473)||(25479582-25479623)


Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 37845258 - 37844803
Alignment:
Q  18 gtcatgagctattgttttcatgattatgcgtttatgcttctaagtcnnnnnnnnttgcagctaaactagtttgtcaattggcaaggttttccaacgtgct 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  37845258 gtcatgagctattgttttcatgattatgcatttatgcttctaagtcaaaaaaaattgcagctaaactagtttgtcaattggcaaggttttccaacgtgct 37845159  T
Q  118 taccaaaggagcaggtcctctcacaactcttccttggtcattgtactgagatccatggcaggggcagatgaacttcttctcagcttgattaaatggcacg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845158 taccaaaggagcaggtcctctcacaactcttccttggtcattgtactgagatccatggcaggggcagatgaacttcttctcagcttgattaaatggcacg 37845059  T
Q  218 acacacccgaggtgagtgcatacggcattaattgcaaatgttgcaagtgttctgtcactctctaccacaagataggtaggatcaccctgttattgaattt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845058 acacacccgaggtgagtgcatacggcattaattgcaaatgttgcaagtgttctgtcactctctaccacaagataggtaggatcaccctgttattgaattt 37844959  T
Q  318 atcaaagtagttattatggtggaagcttgagaaggaatttatttcactcttccaaacagtatctgaagtgcttatagcataaaagcttatcatataagtg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  37844958 atcaaagtagttattatggtggaagcttgagaaggaatttatttcactctttcaaacagtatcttaagtgcttatagcataaaagcttatcatataagtg 37844859  T
Q  418 tttatctataagtcattttcataagctctctagaatagctaatgaaaacgacttat 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844858 tttatctataagtcattttcataagctctctagaatagctaatgaaaacgacttat 37844803  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 33197401 - 33197360
Alignment:
Q  388 cttatagcataaaagcttatcatataagtgtttatctataag 429  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  33197401 cttataacataaacgcttatcatataagtgcttatctataag 33197360  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 28803673 - 28803621
Alignment:
Q  383 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 435  Q
    ||||| |||| ||||||| |||||||||||||||| |||| ||||||| ||||    
T  28803673 aagtgtttatggcataaatgcttatcatataagtgcttatatataagttattt 28803621  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 441
Target Start/End: Complemental strand, 1431475 - 1431417
Alignment:
Q  383 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattttcataa 441  Q
    |||| ||||||||||||  ||||||||||||||||||||| ||||||| |||| |||||    
T  1431475 aagttcttatagcataagtgcttatcatataagtgtttatgtataagttatttccataa 1431417  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 27481459 - 27481415
Alignment:
Q  385 gtgcttatagcataaaagcttatcatataagtgtttatctataag 429  Q
    |||||||||||||||| | |||| |||||||||||||| ||||||    
T  27481459 gtgcttatagcataaatgtttattatataagtgtttatgtataag 27481415  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 10923638 - 10923604
Alignment:
Q  432 attttcataagctctctagaatagctaatgaaaac 466  Q
    |||||||||||||||| ||||||||||||||||||    
T  10923638 attttcataagctctccagaatagctaatgaaaac 10923604  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 6950239 - 6950271
Alignment:
Q  383 aagtgcttatagcataaaagcttatcatataag 415  Q
    |||||||||||||||||| ||||||||||||||    
T  6950239 aagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 26473780 - 26473820
Alignment:
Q  432 attttcataagctctctagaatagctaatgaaaacgactta 472  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  26473780 attttcataagctctctaggatagcttatgaaaacaactta 26473820  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 31875720 - 31875680
Alignment:
Q  389 ttatagcataaaagcttatcatataagtgtttatctataag 429  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  31875720 ttatagcataagcgcttatcatataagtgcttatctataag 31875680  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 429
Target Start/End: Complemental strand, 20982302 - 20982256
Alignment:
Q  383 aagtgcttatagcataaaagcttatcatataagtgtttatctataag 429  Q
    |||||||||||||||||  |||||||||||||||| |||| ||||||    
T  20982302 aagtgcttatagcataagtgcttatcatataagtgcttatgtataag 20982256  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 6739775 - 6739827
Alignment:
Q  383 aagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 435  Q
    ||||||||||| |||||  | |||||||||||| |||||| ||||||||||||    
T  6739775 aagtgcttatatcataagcgtttatcatataagcgtttatgtataagtcattt 6739827  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 24936212 - 24936265
Alignment:
Q  381 tgaagtgcttatagcataaaagcttatcatataagtgtttatctataagtcattt 435  Q
    |||||||||||||||||||| |||||| ||||||||| |||| ||||||| ||||    
T  24936212 tgaagtgcttatagcataaaggcttat-atataagtggttatgtataagttattt 24936265  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 24193493 - 24193541
Alignment:
Q  388 cttatagcataaaagcttatcatataagtgtttatctataagtcatttt 436  Q
    ||||||||||||| |||||||||||||||  |||| ||||||| |||||    
T  24193493 cttatagcataaacgcttatcatataagtacttatgtataagttatttt 24193541  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 29094288 - 29094330
Alignment:
Q  387 gcttatagcataaaagcttatcatataagtgtttatctataag 429  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  29094288 gcttatagcataaacacttatcatataagtgtttatgtataag 29094330  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 24263306 - 24263261
Alignment:
Q  383 aagtgcttatagcataaaagcttatcatataagtgtttatctataa 428  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||||    
T  24263306 aagtgcttatagcataaacgtttagcatataagtgtttatgtataa 24263261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 25479623 - 25479582
Alignment:
Q  432 attttcataagctctctagaatagctaatgaaaacgacttat 473  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  25479623 attttcataagctctctaggatagcttatgaaaacaacttat 25479582  T

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