View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10988_low_6 (Length: 253)

Name: NF10988_low_6
Description: NF10988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10988_low_6
NF10988_low_6
[»] chr2 (4 HSPs)
chr2 (1-239)||(5461045-5461272)
chr2 (134-185)||(32102857-32102909)
chr2 (148-195)||(35198243-35198290)
chr2 (148-188)||(42868048-42868088)
[»] chr4 (6 HSPs)
chr4 (138-188)||(36768850-36768901)
chr4 (148-195)||(12710003-12710050)
chr4 (145-190)||(39598803-39598848)
chr4 (148-184)||(5778452-5778488)
chr4 (151-187)||(9906782-9906818)
chr4 (151-187)||(32369927-32369963)
[»] chr3 (2 HSPs)
chr3 (148-190)||(49636838-49636880)
chr3 (150-189)||(36301999-36302038)
[»] chr8 (7 HSPs)
chr8 (148-189)||(29096952-29096993)
chr8 (150-198)||(25799145-25799193)
chr8 (137-189)||(31551836-31551888)
chr8 (148-189)||(1979418-1979459)
chr8 (151-188)||(2506189-2506226)
chr8 (154-187)||(10170404-10170437)
chr8 (147-187)||(6252504-6252544)
[»] chr6 (3 HSPs)
chr6 (151-186)||(7564179-7564214)
chr6 (148-187)||(34625742-34625781)
chr6 (148-198)||(18803244-18803294)
[»] chr5 (3 HSPs)
chr5 (148-187)||(40878402-40878441)
chr5 (148-185)||(28322251-28322288)
chr5 (148-188)||(9895154-9895194)
[»] chr7 (3 HSPs)
chr7 (138-190)||(38957343-38957397)
chr7 (148-189)||(28266480-28266521)
chr7 (139-184)||(31753765-31753810)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5461045 - 5461272
Alignment:
Q  1 cattgatattaatttcttctctcttttatatttttcaaactgtccatttcaaacataacctgtaatcactgatgttcacaagctttgtagcatggacacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5461045 cattgatattaatttcttctctcttttatatttttcaaactgtccatttcaaacataacctgtaatcactgatgttcacgagctttgtagcatggacacc 5461144  T
Q  101 tttgatcgaaggtatgtccagtgtctaacatttacatgacactgacaatgtgattacattcaattaatttattatctcaaattattaccaatatcaacca 200  Q
    |||||||||||||||||||||||||           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5461145 tttgatcgaaggtatgtccagtgtc-----------tgacattgacaatgtgattacattcaattaatttattatctcaaattattaccaatatcaacca 5461233  T
Q  201 acgtgttagtgttgatatgtcatgttcggtatccacgtc 239  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  5461234 acgtgttagtgttgatatatcatgtccggtatccacgtc 5461272  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 32102857 - 32102909
Alignment:
Q  134 acatgacactgacaa-tgtgattacattcaattaatttattatctcaaattat 185  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  32102857 acatgacactgacaaatgtgattatattcaattaatttattttctcaaattat 32102909  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 35198243 - 35198290
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattaccaatatc 195  Q
    |||||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  35198243 atgtgattacattcaattaattcattttcttaaattatgaccaatatc 35198290  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 42868048 - 42868088
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattac 188  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  42868048 atgtgattacattcagttaatttaatttctcaaattattac 42868088  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 36768850 - 36768901
Alignment:
Q  138 gacactgaca-atgtgattacattcaattaatttattatctcaaattattac 188  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  36768850 gacactgacacatgtgattacattcaattaattaattctctcaaattattac 36768901  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 12710050 - 12710003
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattaccaatatc 195  Q
    ||||| |||| ||||||||||||||| ||||||||||||||| |||||    
T  12710050 atgtgtttacgttcaattaatttattttctcaaattattaccgatatc 12710003  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 39598803 - 39598848
Alignment:
Q  145 acaatgtgattacattcaattaatttattatctcaaattattacca 190  Q
    ||||||||||||||||||||||||| ||| || ||||| |||||||    
T  39598803 acaatgtgattacattcaattaattcattttcgcaaatcattacca 39598848  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 5778452 - 5778488
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaatta 184  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  5778452 atgtgattacattcaattgatttattgtctcaaatta 5778488  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 9906818 - 9906782
Alignment:
Q  151 tgattacattcaattaatttattatctcaaattatta 187  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  9906818 tgattacattcaattaatttattttctctaattatta 9906782  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 32369927 - 32369963
Alignment:
Q  151 tgattacattcaattaatttattatctcaaattatta 187  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatta 32369963  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 49636838 - 49636880
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattacca 190  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  49636838 atgtgattacattcaattaattcattttctcaaattattacca 49636880  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 36302038 - 36301999
Alignment:
Q  150 gtgattacattcaattaatttattatctcaaattattacc 189  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  36302038 gtgattacattcaattaatttattttctcacattattacc 36301999  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 29096993 - 29096952
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattacc 189  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  29096993 atgtgattacattcaattaatttattttcttaaattattacc 29096952  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 25799193 - 25799145
Alignment:
Q  150 gtgattacattcaattaatttattatctcaaattattaccaatatcaac 198  Q
    ||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  25799193 gtgatcacattcaattaattcattttctcaaattattaccaatgtcaac 25799145  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 31551836 - 31551888
Alignment:
Q  137 tgacactgacaatgtgattacattcaattaatttattatctcaaattattacc 189  Q
    |||||| ||||||||||||| |||||||| ||| ||| |||||||||||||||    
T  31551836 tgacaccgacaatgtgattatattcaatttattcattttctcaaattattacc 31551888  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 1979459 - 1979418
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattacc 189  Q
    ||||||||||||| |||||||| ||| |||||||||||||||    
T  1979459 atgtgattacatttaattaattaattttctcaaattattacc 1979418  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 2506226 - 2506189
Alignment:
Q  151 tgattacattcaattaatttattatctcaaattattac 188  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  2506226 tgattacattcaattaatttattttctctaattattac 2506189  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 10170404 - 10170437
Alignment:
Q  154 ttacattcaattaatttattatctcaaattatta 187  Q
    |||||||||||||||||||| |||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattatta 10170437  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 6252504 - 6252544
Alignment:
Q  147 aatgtgattacattcaattaatttattatctcaaattatta 187  Q
    |||||||||||||| |||||| ||||| |||||||||||||    
T  6252504 aatgtgattacatttaattaaattattttctcaaattatta 6252544  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 7564179 - 7564214
Alignment:
Q  151 tgattacattcaattaatttattatctcaaattatt 186  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7564179 tgattacattcaattaatttattttctcaaattatt 7564214  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 34625781 - 34625742
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattatta 187  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  34625781 atgtgattacattcaattaattcattttctcaaattatta 34625742  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 18803294 - 18803244
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattaccaatatcaac 198  Q
    |||||||||||||||||||  | ||| |||||||| |||||||||||||||    
T  18803294 atgtgattacattcaattatgtaattttctcaaataattaccaatatcaac 18803244  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 40878402 - 40878441
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattatta 187  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  40878402 atgtgattacattcaattaatttagtttctcaaattatta 40878441  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 28322288 - 28322251
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattat 185  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  28322288 atgtgattacattcaattaattcattttctcaaattat 28322251  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 9895194 - 9895154
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattac 188  Q
    |||||||||| ||||| ||||||||| ||||||||||||||    
T  9895194 atgtgattacgttcaaataatttattttctcaaattattac 9895154  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 38957343 - 38957397
Alignment:
Q  138 gacactgaca-atgtgattacattcaattaattta-ttatctcaaattattacca 190  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||| ||||    
T  38957343 gacactgacacatgtgattacattcaattaatttatttttctcaaattatcacca 38957397  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 28266521 - 28266480
Alignment:
Q  148 atgtgattacattcaattaatttattatctcaaattattacc 189  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  28266521 atgtgtttacatccaattaatttattttctcaaattattacc 28266480  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 31753765 - 31753810
Alignment:
Q  139 acactgacaatgtgattacattcaattaatttattatctcaaatta 184  Q
    |||| ||||||||||||||||||||||| || ||| ||||||||||    
T  31753765 acacggacaatgtgattacattcaattatttaattttctcaaatta 31753810  T

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