View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10988_low_8 (Length: 240)
Name: NF10988_low_8
Description: NF10988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10988_low_8 |
 | |
|
| [»] scaffold0489 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 25265035 - 25264825
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25265035 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaa |
25264936 |
T |
|
| Q |
118 |
ttcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25264935 |
ttcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttga |
25264836 |
T |
|
| Q |
218 |
gatgtccatct |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
25264835 |
gatgtcaatct |
25264825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 33294790 - 33294995
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33294790 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaatttttttaatattggga |
33294889 |
T |
|
| Q |
117 |
attcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33294890 |
attcgagcattcacaatgaggattttgttgttataatttgattttgatattattaataaaagtttagttgggactatgaacattgtggattttagtgttg |
33294989 |
T |
|
| Q |
217 |
agatgt |
222 |
Q |
| |
|
|||||| |
|
|
| T |
33294990 |
agatgt |
33294995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 33258562 - 33258346
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33258562 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagagttttgtgaattttttcaatat |
33258463 |
T |
|
| Q |
112 |
tgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258462 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
33258363 |
T |
|
| Q |
212 |
tgttgagatgtccatct |
228 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
33258362 |
tgttgagatgtcaatct |
33258346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 33278734 - 33278518
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33278734 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagagttttgtgaattttttcaatat |
33278635 |
T |
|
| Q |
112 |
tgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33278634 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
33278535 |
T |
|
| Q |
212 |
tgttgagatgtccatct |
228 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
33278534 |
tgttgagatgtcaatct |
33278518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 28920005 - 28920214
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28920005 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaacatcattctttaggtttttcaatttgagaattttgtgaattttttcaat |
28920104 |
T |
|
| Q |
110 |
attgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatttt |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28920105 |
attggaaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttag-tgggactatgaacattgtggatttt |
28920203 |
T |
|
| Q |
210 |
agtgttgagat |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
28920204 |
agtgttgagat |
28920214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 36146281 - 36146490
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36146281 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaatttt-tcaatattgggaa |
36146379 |
T |
|
| Q |
118 |
ttcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttga |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
36146380 |
ttcgagtattcacaatgaggattttgttattataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggattttagtgttga |
36146479 |
T |
|
| Q |
218 |
gatgtccatct |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
36146480 |
gatgtcaatct |
36146490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 7654624 - 7654835
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
7654624 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttaagaattttgtgaatttt-tcaatattggg |
7654722 |
T |
|
| Q |
116 |
aattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgtt |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7654723 |
aattcgagtattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagtgtt |
7654822 |
T |
|
| Q |
216 |
gagatgtccatct |
228 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
7654823 |
gagatgtcaatct |
7654835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 19056983 - 19056772
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
19056983 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttttgaattttttcaatattggaa |
19056884 |
T |
|
| Q |
117 |
attcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttg |
216 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
19056883 |
atttgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactgtgaacattgtagattttagtgttg |
19056784 |
T |
|
| Q |
217 |
agatgtccatct |
228 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19056783 |
agatgtcaatct |
19056772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 24088702 - 24088862
Alignment:
| Q |
70 |
ttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattat |
169 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
24088702 |
ttaggtttttcaattttggaattttcgtaattttttcaaaattgggaattcaagcattcttaatgaggatttttttgttataatttgattatgatattat |
24088801 |
T |
|
| Q |
170 |
caataaaagtttagttgggac--tatgaacattgtggattttagtgttgagatgtccatct |
228 |
Q |
| |
|
|||||| ||||| ||| |||| |||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
24088802 |
caataagagttttgttaggactatatggacattgtggattttggtgttgagatgtcaatct |
24088862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 53355799 - 53355584
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53355799 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
53355701 |
T |
|
| Q |
112 |
tgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53355700 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
53355601 |
T |
|
| Q |
212 |
tgttgagatgtccatct |
228 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
53355600 |
tgttgagatgtcaatct |
53355584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 19995413 - 19995631
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19995413 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaat |
19995512 |
T |
|
| Q |
110 |
attgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatttt |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19995513 |
attgggaatttgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttt |
19995612 |
T |
|
| Q |
210 |
agtgttgagatgtccatct |
228 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
19995613 |
agtgttgagatgtcaatct |
19995631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 55948297 - 55948510
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn---tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55948297 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaacaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgg |
55948396 |
T |
|
| Q |
115 |
gaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgt |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55948397 |
gaattcgagtattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgt |
55948496 |
T |
|
| Q |
215 |
tgagatgtccatct |
228 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
55948497 |
tgagatgtcaatct |
55948510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 44252304 - 44252093
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggga |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44252304 |
agatgcgagatcaatgatgagacaagagttggtaatgaaaaaaaaatcattctttaggttttttaatttgagaattttgtgaattttttcaatattggga |
44252205 |
T |
|
| Q |
117 |
attcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttg |
216 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
44252204 |
attcgatcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggattttagtgttg |
44252105 |
T |
|
| Q |
217 |
agatgtccatct |
228 |
Q |
| |
|
||||||| |||| |
|
|
| T |
44252104 |
agatgtcaatct |
44252093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 39653829 - 39653675
Alignment:
| Q |
64 |
cattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgctgttataatttgatttcga |
163 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||| || |
|
|
| T |
39653829 |
cattctttaggtttttcaatttggaagttttgtgaattttttcaatattgagaatttgagcattctcaatgaggactttgttgttataatttgattatga |
39653730 |
T |
|
| Q |
164 |
tattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgag |
218 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39653729 |
tattatcaataagaattttgttgggactatgaacattgtggattttagtgttgag |
39653675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 45277102 - 45276892
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45277102 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaa |
45277003 |
T |
|
| Q |
118 |
ttcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45277002 |
ttcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaattttagttgggactatgaacattgtggattttagtgttaa |
45276903 |
T |
|
| Q |
218 |
gatgtccatct |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
45276902 |
gatgtcaatct |
45276892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 31392993 - 31393203
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31392993 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggaaa |
31393092 |
T |
|
| Q |
118 |
ttcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31393093 |
ttcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgagactatgaacattgtggattttagtgttga |
31393192 |
T |
|
| Q |
218 |
gatgtccatct |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
31393193 |
gatgtcaatct |
31393203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 8230956 - 8231167
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8230956 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggga |
8231055 |
T |
|
| Q |
117 |
attcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
8231056 |
attcgagcattcacaatgaggattttgttgttataatttgattttgatattaacaataaaagtttatttgagactatgaacattgtgaattttagtgttg |
8231155 |
T |
|
| Q |
217 |
agatgtccatct |
228 |
Q |
| |
|
||||||| |||| |
|
|
| T |
8231156 |
agatgtcaatct |
8231167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 21715993 - 21716167
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21715993 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
21716092 |
T |
|
| Q |
112 |
tgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttg |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21716093 |
tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttg |
21716167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 32882054 - 32882260
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32882054 |
agatgcgagatcaatgatgagacgagagtttgtaatgaaaaaaaaatcattctttaggtttttcaattttagaattttgtgaattttttcaatattggga |
32882153 |
T |
|
| Q |
117 |
attcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32882154 |
gttcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaaaattagttcggactatgaacattgtggattttagtgttg |
32882253 |
T |
|
| Q |
217 |
agatgtc |
223 |
Q |
| |
|
||||||| |
|
|
| T |
32882254 |
agatgtc |
32882260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 40029152 - 40028994
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn---tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgg |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40029152 |
agatgtgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttt-caatattgg |
40029054 |
T |
|
| Q |
115 |
gaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaata |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
40029053 |
aaattcgagcattcataatgaggattttgttgttataatttgattttgatattatcaata |
40028994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 40028995 - 40028958
Alignment:
| Q |
191 |
tatgaacattgtggattttagtgttgagatgtccatct |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40028995 |
tatgaacattgtggattttagtgttgagatgtcaatct |
40028958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 1841105 - 1841315
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1841105 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattgtttcaatat |
1841204 |
T |
|
| Q |
112 |
tgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1841205 |
tgggaattcgagcattcacaatgaggattttgttgttataattttattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag |
1841304 |
T |
|
| Q |
212 |
tgttgagatgt |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
1841305 |
tgttgagatgt |
1841315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 13948138 - 13948173
Alignment:
| Q |
165 |
attatcaataaaagtttagttgggactatgaacatt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13948138 |
attatcaataaaaatttagttgggactatgaacatt |
13948173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 14089345 - 14089380
Alignment:
| Q |
165 |
attatcaataaaagtttagttgggactatgaacatt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14089345 |
attatcaataaaaatttagttgggactatgaacatt |
14089380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 33733874 - 33734093
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn---tcattctttaggtttttcaatttgagaattttgtgaattttttcaa |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33733874 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaa |
33733973 |
T |
|
| Q |
109 |
tattgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33733974 |
tattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattt |
33734073 |
T |
|
| Q |
209 |
tagtgttgagatgtccatct |
228 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
33734074 |
tagtgttgagatgtcaatct |
33734093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 53528675 - 53528463
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53528675 |
agatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggg |
53528576 |
T |
|
| Q |
116 |
aattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53528575 |
aattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagtgtt |
53528476 |
T |
|
| Q |
216 |
gagatgtccatct |
228 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
53528475 |
gagatgtcaatct |
53528463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 30333368 - 30333581
Alignment:
| Q |
13 |
agcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatatt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30333368 |
agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaatttt-tcaatatt |
30333466 |
T |
|
| Q |
113 |
gggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30333467 |
gggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttag-tgggactatgaacattgtggattttagt |
30333565 |
T |
|
| Q |
213 |
gttgagatgtccatct |
228 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
30333566 |
gttgagatgtcaatct |
30333581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 1418115 - 1417898
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1418115 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaata |
1418016 |
T |
|
| Q |
111 |
ttgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatttta |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1418015 |
ttgggaattcgagcattcacagtgaggattttgttgttataatttgattttgatattatcaataaaagtttatttaggactatgaacattgtggatttta |
1417916 |
T |
|
| Q |
211 |
gtgttgagatgtccatct |
228 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
1417915 |
gtgttgagatgtcaatct |
1417898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 25915395 - 25915180
Alignment:
| Q |
18 |
agatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn----tcattctttaggttttt-caatttgagaattttgtgaattttttcaatatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25915395 |
agatgcgagatcaatgatgagacgagagttggtaatgagaaaaaaaaaatcattctttaggttttttcaatttgagaattttgtgaattttttcaatatt |
25915296 |
T |
|
| Q |
113 |
gggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagt |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25915295 |
gggaatttgagcattcacaatgaggattttgttgttatgatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagt |
25915196 |
T |
|
| Q |
213 |
gttgagatgtccatct |
228 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
25915195 |
gttgagatgtcaatct |
25915180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 19083511 - 19083724
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19083511 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaat |
19083610 |
T |
|
| Q |
110 |
attgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggatttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
19083611 |
attgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttatttatgactatgaacattgtggatttt |
19083710 |
T |
|
| Q |
210 |
agtgttgagatgtc |
223 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
19083711 |
agtgttgagttgtc |
19083724 |
T |
|
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Target: scaffold0489 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 6250 - 6467
Alignment:
| Q |
12 |
cagcacagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnn----tcattctttaggtttttcaatttgagaattttgtgaattttttca |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6250 |
cagcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttca |
6349 |
T |
|
| Q |
108 |
atattgggaattcgagcattcacaatgaggattttgctgttataatttgatttcgatattatcaataaaa-gtttagttgg-gactatgaacattgtgga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
6350 |
atattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaaagtttaatttatgactatgaacattgtgga |
6449 |
T |
|
| Q |
206 |
ttttagtgttgagatgtc |
223 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
6450 |
ttttagtgttgagttgtc |
6467 |
T |
|
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