View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_high_34 (Length: 251)
Name: NF1098_high_34
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_high_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 9417994 - 9417737
Alignment:
| Q |
7 |
tcgaagaatatgcatgggtttggtt-cattggcttaatttactattgtaatttctttgcttgtgagacgcgtcttcacatgcaaatttagtggcaagtaa |
105 |
Q |
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| T |
9417994 |
tcgaaggaaatgcatgggtttggtttcattggcttaatttactattgt---ttctttgcttgtgagacgcgtcttcacatgcaaatttagtgccaagtaa |
9417898 |
T |
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| Q |
106 |
agtacaagtttattgttgactgactcaaatggagcagccacaatt---------------aattattacactcatgtccacattctcaaagttgactccg |
190 |
Q |
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| T |
9417897 |
agtacaagtttattgttgactgactcaaatggagcacccacaattatttataattaagtaaattattacactcatgtccacattctcaaagttgactccg |
9417798 |
T |
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| Q |
191 |
accaacgtgtatatcctcgtgggaagtgaaacccatcctcttgagggtggtaaatattttt |
251 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9417797 |
accaacgtgtatatcctcgtgggaagtggaacccatcctcttgagggtggtaaatattttt |
9417737 |
T |
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