View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_high_44 (Length: 218)

Name: NF1098_high_44
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_high_44
NF1098_high_44
[»] chr4 (2 HSPs)
chr4 (107-203)||(16841184-16841280)
chr4 (45-78)||(16841309-16841342)
[»] chr5 (5 HSPs)
chr5 (115-184)||(37704379-37704445)
chr5 (112-184)||(37437442-37437511)
chr5 (112-182)||(37698554-37698625)
chr5 (45-78)||(37437398-37437431)
chr5 (45-78)||(37698490-37698523)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 16841280 - 16841184
Alignment:
Q  107 ctttctactttgatgatttacgatataccaactgattagcctcctttatttatataggaaacataacctgaaactaagttgtggggtattctcttat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16841280 ctttctactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaagttgtggggtattctcttat 16841184  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 16841342 - 16841309
Alignment:
Q  45 aaaaaggaccccatttagagcaacttactccgat 78  Q
    ||||||||||||||||||||||||||||||||||    
T  16841342 aaaaaggaccccatttagagcaacttactccgat 16841309  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 37704379 - 37704445
Alignment:
Q  115 tttgatgatttacgatataccaactgattagcctcctttatttatataggaaacataacctgaaactaag 184  Q
    |||||||||||| |||||||||| |||||||||||   ||||||||||||||||||||||||||||||||    
T  37704379 tttgatgatttaggatataccaattgattagcctc---tatttatataggaaacataacctgaaactaag 37704445  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 37437442 - 37437511
Alignment:
Q  112 tactttgatgatttacgatataccaactgattagcctcctttatttatataggaaacataacctgaaactaag 184  Q
    ||||||||||||||| |||||||||| |||||||||||   ||||||||||||||||||||| ||||||||||    
T  37437442 tactttgatgatttaggatataccaaatgattagcctc---tatttatataggaaacataacttgaaactaag 37437511  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 37698554 - 37698625
Alignment:
Q  112 tactttgatgatttacg----atataccaactgattagcctcctttatttatataggaaacataacctgaaacta 182  Q
    |||||||||||||||||    ||||||||| |||||||||||   ||||||||||||||||||||||||||||||    
T  37698554 tactttgatgatttacgtaggatataccaattgattagcctc---tatttatataggaaacataacctgaaacta 37698625  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 37437398 - 37437431
Alignment:
Q  45 aaaaaggaccccatttagagcaacttactccgat 78  Q
    |||||||||||||||||||||||||||| |||||    
T  37437398 aaaaaggaccccatttagagcaacttacaccgat 37437431  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 37698490 - 37698523
Alignment:
Q  45 aaaaaggaccccatttagagcaacttactccgat 78  Q
    |||||||||||||||||||||||||||| |||||    
T  37698490 aaaaaggaccccatttagagcaacttacaccgat 37698523  T

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