View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_high_48 (Length: 210)
Name: NF1098_high_48
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 16841280 - 16841184
Alignment:
| Q |
86 |
ctttctactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaagttgtggggtattctcttat |
182 |
Q |
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| T |
16841280 |
ctttctactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaagttgtggggtattctcttat |
16841184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 16841342 - 16841309
Alignment:
| Q |
24 |
aaaaaggaccccatttagagcaacttactccgat |
57 |
Q |
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| T |
16841342 |
aaaaaggaccccatttagagcaacttactccgat |
16841309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 37704379 - 37704445
Alignment:
| Q |
94 |
tttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaag |
163 |
Q |
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| T |
37704379 |
tttgatgatttaggatataccaattgattagcctc---tatttatataggaaacataacctgaaactaag |
37704445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 37437442 - 37437511
Alignment:
| Q |
91 |
tactttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaag |
163 |
Q |
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| T |
37437442 |
tactttgatgatttaggatataccaaatgattagcctc---tatttatataggaaacataacttgaaactaag |
37437511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 37698554 - 37698625
Alignment:
| Q |
91 |
tactttgatgatttacg----atataccaactgattagcctcctctatttatataggaaacataacctgaaacta |
161 |
Q |
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| T |
37698554 |
tactttgatgatttacgtaggatataccaattgattagcctc---tatttatataggaaacataacctgaaacta |
37698625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 37437398 - 37437431
Alignment:
| Q |
24 |
aaaaaggaccccatttagagcaacttactccgat |
57 |
Q |
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| T |
37437398 |
aaaaaggaccccatttagagcaacttacaccgat |
37437431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 37698490 - 37698523
Alignment:
| Q |
24 |
aaaaaggaccccatttagagcaacttactccgat |
57 |
Q |
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| T |
37698490 |
aaaaaggaccccatttagagcaacttacaccgat |
37698523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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