View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_high_5 (Length: 667)
Name: NF1098_high_5
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 38298155 - 38298366
Alignment:
| Q |
7 |
attgccgtgtatccaatccataaccccccatctcctctgtttctcatcagttacaatcacaattctcggtttcatctagctacatacacacaccttc--- |
103 |
Q |
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| T |
38298155 |
attgccgtgtatccaatccataaccccccatctcctctgtttctcatcagttacaatcacaattctcggtttcatctagctacatacacacaccttctct |
38298254 |
T |
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| Q |
104 |
--tcttctcttctctttttagttttcgtgtccattttctcaggaaaagccaccctacttttccgttaaacaccgtccacttttaacgctccttaagtttc |
201 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38298255 |
tctcttctcttctcttcttagttttcgtgtccattttctcaggaaaagccaccctacttttccgttaaacaccgtccacttttaacgctccttaagtttc |
38298354 |
T |
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| Q |
202 |
aaacgtgaatac |
213 |
Q |
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|||||||||||| |
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| T |
38298355 |
aaacgtgaatac |
38298366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 390 - 544
Target Start/End: Original strand, 38298531 - 38298684
Alignment:
| Q |
390 |
tagtttttatggcacttagattttgcgaaaaaataggtgtctaaacgttaaaaaatagaaagnnnnnnnacttgaagcaatttgcatttcaattctcttt |
489 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38298531 |
tagtttttatgacacttagattttgcgaaaaaataggtgtctaaacgttaaaaaatagaaagtttttt-acttgaagcaatttgcatttcaattctcttt |
38298629 |
T |
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| Q |
490 |
ctttccttctttgaaacacaaaacttgcaatccttgattaatatatatatatacc |
544 |
Q |
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| T |
38298630 |
ctttccttctttgaaacacaaaacttgcaatccttgattaatatctatatatacc |
38298684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 38298386 - 38298487
Alignment:
| Q |
237 |
tgcttcatttctatgtttgtttcttaaacattgaacaaagtagatttcttttgagttttcttcaatccttagacatagcgtgtgttgaatccacaacatt |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38298386 |
tgcttcatttctatgtttgtttcttaaacattgaacaaagtagatttcttttgagttttcttcaagccttagacatagcgtgtgttgaatccacaacatt |
38298485 |
T |
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| Q |
337 |
gt |
338 |
Q |
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|| |
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| T |
38298486 |
gt |
38298487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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