View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_high_7 (Length: 615)
Name: NF1098_high_7
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 99 - 602
Target Start/End: Complemental strand, 30700292 - 30699783
Alignment:
| Q |
99 |
gtcaatggactgcaccgtcgcatggatggatatgtcaagtgtaatcttgatgcagctatccttaaagaagtgggatggatgcgttgaagttagtttttgt |
198 |
Q |
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| T |
30700292 |
gtcaatggactgcaccgtcgcatggatggatatgtcaagtgtaatcttgatgcagctatccttaaagaagtgggatggatgcgttgaaattggtttttgt |
30700193 |
T |
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| Q |
199 |
ttgagcaaccagcaaggaaatgtgttgcattgcacttctagattaataggagatactctcaactcttatctaaaactagctttaagacgagtgtcgtcca |
298 |
Q |
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| T |
30700192 |
ttgagcaaccagcaagaaaatgtgttgcattgcacttctagattaataggagatactctcaactcttatctaaaactagctttaagaagagtgtcgtcca |
30700093 |
T |
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| Q |
299 |
cttttctaatttattttgttatgaagaaggtttatttgtgaaaatttgattttaaaattataggtatagatgaaaatctctgatatac-------ctaaa |
391 |
Q |
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| T |
30700092 |
cttttctaatttattttgttatgaagaaggtttatttgtgaaaatttgattttaaaattataggtatagatgaaaatctctgatatacctataggctata |
30699993 |
T |
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| Q |
392 |
gctcctcctcttgtcttttaccttatttccctttttattcatttataacccgcacatacctcccctcattcacttaaatttatgcacacacctcccattc |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30699992 |
gctcctcctcttgtcttttaccttatttccctttttattcatttataacccgcacatacctcccctcattcacttaaatttatgcacacacctcccattc |
30699893 |
T |
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| Q |
492 |
tccactgaaacatgtcaacttctttcttcagtgcatgatctctcatcactcacgtagctgttctcttaacacatataagtttgtctaactctatgtaaaa |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30699892 |
tccactgaaacatgtcaacttctttcttcagtgcatgatctctcatcactcacgtagctgttctc-taacacatataagtttgtctaactctatgtaaaa |
30699794 |
T |
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| Q |
592 |
gcttgcaacag |
602 |
Q |
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| T |
30699793 |
gtttgcaacag |
30699783 |
T |
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