View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1098_high_8 (Length: 580)
Name: NF1098_high_8
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_high_8 |
 | |
|
| [»] scaffold0356 (2 HSPs) |
| | |
|
| [»] scaffold0665 (1 HSPs) |
| | |
|
| [»] scaffold1821 (1 HSPs) |
| | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 29 - 575
Target Start/End: Original strand, 15558118 - 15558664
Alignment:
| Q |
29 |
aaatgagcaagactccactgctgcagatgtagagccttacaactccaacacgcaacaaacaatatcacaaatgacgcagaggtaaatttatcgtttcagg |
128 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15558118 |
aaatgagcaagactccactgctgtagatgtagagcctttcaactccaacacgcagcaaacaatatcacaaatgacgcataggtaaatttatcgtttcagg |
15558217 |
T |
|
| Q |
129 |
tcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatga |
228 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15558218 |
tcccacccatacatcaataagtacacagcagcaggaatatacataatggtcatgatttatgggccagaatccgtgagtatgaccaacgaatggctgatga |
15558317 |
T |
|
| Q |
229 |
aggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtcctcctcca |
328 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
15558318 |
aggcttcactcaagtttttacaaagtcgcagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaacccatgcaaagggtggtcctcctcca |
15558417 |
T |
|
| Q |
329 |
tcatccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgctttttcgtgaaggtaacagctgtgccgacaaaatgg |
428 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
15558418 |
tcttccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgctttttcgtgaaggtaacagctgtgcagtcaaattgg |
15558517 |
T |
|
| Q |
429 |
cgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaatta |
528 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15558518 |
cgaatatgggtcatgagattcaaggttctatatggttagaaactcttctagacaagttgcatatggatttctaccgcgacagaattgatcttcccaatta |
15558617 |
T |
|
| Q |
529 |
tagatttccgtagtcatttatttattttgcattgttttcttttctgt |
575 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15558618 |
tagatttccttagtcatttatttattttgcattgtttgcttttctgt |
15558664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 151 - 363
Target Start/End: Complemental strand, 23833232 - 23833017
Alignment:
| Q |
151 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
250 |
Q |
| |
|
||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
23833232 |
acacatcagtaaaaacatacagaatggtctggatttatgggccagaattcgcgaatacgaccaacgaatggctgatgaaggcttcacgcaagtcctctca |
23833133 |
T |
|
| Q |
251 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgtt |
347 |
Q |
| |
|
||||| | |||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
23833132 |
aagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcattatcatactcgtgcaaagggaggtcctcctccatcttcccaatgattatgtt |
23833033 |
T |
|
| Q |
348 |
atattggaatgtccga |
363 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
23833032 |
attttggaatgtccga |
23833017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 151 - 363
Target Start/End: Original strand, 22955160 - 22955375
Alignment:
| Q |
151 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
250 |
Q |
| |
|
||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || || || |||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
22955160 |
acacatcagtaaaaacatacagaatggtctggatttatgggccagaattcgcgaatacgaccaacgaatggctgatgaaggcttcatgcaagtcctctca |
22955259 |
T |
|
| Q |
251 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgtt |
347 |
Q |
| |
|
||||| | |||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
22955260 |
aagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgtattatcatactcgtgcaaagggaggtcctcctccatcttcccaatgattatgtt |
22955359 |
T |
|
| Q |
348 |
atattggaatgtccga |
363 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
22955360 |
attttggaatgtccga |
22955375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 393 - 551
Target Start/End: Original strand, 15827401 - 15827556
Alignment:
| Q |
393 |
tttttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatat |
492 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
15827401 |
tttttcgtgaaggtaac---tgtgaggacaaattggcgaatatgggtcataggattcaaggttgtatttggttagaaattcttccagccgagttacatat |
15827497 |
T |
|
| Q |
493 |
ggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttattt |
551 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
15827498 |
ggatttctaccgcgatagaattggtcttcttaattatagatttccttagtcatttattt |
15827556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 30491956 - 30491990
Alignment:
| Q |
182 |
gatttatgggctagaatccgtgagtatgaccaacg |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30491956 |
gatttatgggctagaattcgtgagtatgaccaacg |
30491990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 121 - 362
Target Start/End: Complemental strand, 8447323 - 8447085
Alignment:
| Q |
121 |
gtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatg |
220 |
Q |
| |
|
||||||||||||||||||||| ||| | || |||| ||| ||||||||||| ||| |||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
8447323 |
gtttcaggtcccacccgtacagcaacatgttcacagcagcaggaacatacagaatggtcttgatttatgggccagaatccgtgaatatgatcaacgaatg |
8447224 |
T |
|
| Q |
221 |
gctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtc |
320 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8447223 |
gctgacgaaggcttcactcaagttcttacaaaggcgcagaagcaaaatcgtaaaatgcaagtcattggcaagacctatcaaacccgtgcaaagggtggtc |
8447124 |
T |
|
| Q |
321 |
ctcctccatcatccaaatgattctgttatattggaatgtccg |
362 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
8447123 |
---ctccatcttccaaataattctgttatattggaatgtccg |
8447085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 395 - 557
Target Start/End: Complemental strand, 26421382 - 26421220
Alignment:
| Q |
395 |
tttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatgg |
494 |
Q |
| |
|
|||||||||||||||| |||||| | || ||| ||||||||||||||||||| |||||| |||||||||||| || |||| ||| ||||||||||||| |
|
|
| T |
26421382 |
tttcgtgaaggtaacaactgtgcgaataatttggtgaatatgggtcatgagatttaaggttttatttggttagacacgcttcaagctgagttgcatatgg |
26421283 |
T |
|
| Q |
495 |
atttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttatttattttg |
557 |
Q |
| |
|
|||| | || || ||||||| ||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
26421282 |
atttctttcgagatagaattggtctacccaattatagatttccttagtcttttatttattttg |
26421220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 498
Target Start/End: Complemental strand, 8447071 - 8446976
Alignment:
| Q |
403 |
aggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggattt |
498 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
8447071 |
aggtatcagctgtgcggacaaattggcgaatatgggtcattggattcaaggttctattaggttagaaactcttccgacaaagttgcatatggattt |
8446976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 72 - 395
Target Start/End: Original strand, 24026900 - 24027224
Alignment:
| Q |
72 |
tccaacacgcaacaaacaatatcacaaatgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacataca |
171 |
Q |
| |
|
||||||||||||||||||||| ||| |||| | ||||| ||||||||| ||||||| || | || || | | |||||||||||| ||||||||||| |
|
|
| T |
24026900 |
tccaacacgcaacaaacaataacactgatgatgtagaggcaaatttatcacttcaggttccgtctgttcagccagaagtacacaacatcaggaacataca |
24026999 |
T |
|
| Q |
172 |
aaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatctt |
271 |
Q |
| |
|
|||| ||||||||||||||| || || | || |||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| |||| |||| |
|
|
| T |
24027000 |
aaatgatcttgatttatgggccagtatacacgaatatgaccaactaatggctgatgaaggcttcactcaagtgctttcaaagtcgcagaaccaaagtctt |
24027099 |
T |
|
| Q |
272 |
aaaaagcaagtcattggc-aagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccgaagtattg |
370 |
Q |
| |
|
||||| |||||||||||| ||||| ||| |||| |||| |||||||||| ||||||||| ||| ||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
24027100 |
aaaaatcaagtcattggcaaagccttattaaacccgtgtgaagggtggtcatcctccatcttcccaatgattatgttatattgaaatgtccgaggtattg |
24027199 |
T |
|
| Q |
371 |
gtaatgtcgataccaaaattgcttt |
395 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
24027200 |
gcaatgtcgataccaaaattgcttt |
24027224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 473 - 565
Target Start/End: Complemental strand, 24528041 - 24527950
Alignment:
| Q |
473 |
cttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttatttattttgcattgttt |
565 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
24528041 |
cttccagccgagttgcatatggatttttaccg-gacataattgatcttccctttgatagatttccttactcatttatttattttgcattgttt |
24527950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 145 - 395
Target Start/End: Original strand, 9235 - 9485
Alignment:
| Q |
145 |
ataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtt |
244 |
Q |
| |
|
||||||||||| ||| || ||| |||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9235 |
ataagtacacagcagcagaaacgtacagaatgatcttgatttatgggccagaatacgtgaatatgaccaacgaatggctgatgaaggcttcactcaagtc |
9334 |
T |
|
| Q |
245 |
cttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattct |
344 |
Q |
| |
|
||| |||| ||| |||| || ||||||||||||||||| || ||||||| ||||| || || |||||||| ||| ||| ||||| ||| ||||||| | |
|
|
| T |
9335 |
ctttcaaaatcgcagaaacataatcttaaaaagcaagttgttagcaagccttatcagacccgagcaaagggcggtaatccaccatcttcccaatgattat |
9434 |
T |
|
| Q |
345 |
gttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
395 |
Q |
| |
|
|| ||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
9435 |
tttgtattggactgtccgaggtattgacaatgtcgataccaaaattgcttt |
9485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 401 - 515
Target Start/End: Original strand, 13475 - 13589
Alignment:
| Q |
401 |
gaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggattttt |
500 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||||||||||||| |||| |||||||||||||||||||||| |||| | | ||| ||||| ||||||| | |
|
|
| T |
13475 |
gaaggtaacagatgtgcggacaatttagcgaatatgggtcatgggattcaaggttctatttggttagaaacgcttccaactgagctgcatttggatttct |
13574 |
T |
|
| Q |
501 |
accgcgacagaattg |
515 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
13575 |
atcgcgacagaattg |
13589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 145 - 395
Target Start/End: Original strand, 6614 - 6865
Alignment:
| Q |
145 |
ataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtt |
244 |
Q |
| |
|
||||||||||| ||| || ||| |||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6614 |
ataagtacacagcagcagaaacgtacagaatgatcttgatttatgggccagaatacgtgaatatgaccaacgaatggctgatgaaggcttcactcaagtc |
6713 |
T |
|
| Q |
245 |
cttacaaagtcgtagaagcaaaatctt-aaaaagcaagtcattggcaagccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattc |
343 |
Q |
| |
|
||| |||| ||| |||| || |||||| ||||||||||| || ||||||| ||||| || || |||||||| ||| ||| ||||| ||| ||||||| |
|
|
| T |
6714 |
ctttcaaaatcgcagaaacataatcttaaaaaagcaagttgttagcaagccttatcagacccgagcaaagggcggtaatccaccatcttcccaatgatta |
6813 |
T |
|
| Q |
344 |
tgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
395 |
Q |
| |
|
| || ||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6814 |
ttttgtattggactgtccgaggtattgacaatgtcgataccaaaattgcttt |
6865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 99 - 363
Target Start/End: Original strand, 27187318 - 27187585
Alignment:
| Q |
99 |
atgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaat |
198 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| | || || | ||| ||||| ||||| |||||||| ||| |||| ||||||||||| ||||| |
|
|
| T |
27187318 |
atgacgcagaggtaaatatatcgtctcaggtcccatctgttcagcctgaagcacacatcagtaaaaacatacagaatggtctggatttatgggccagaat |
27187417 |
T |
|
| Q |
199 |
ccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---c |
295 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| |
|
|
| T |
27187418 |
tcgcgaatacgaccaacgaatggctgatgaaggcttcacgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcat |
27187517 |
T |
|
| Q |
296 |
tatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccga |
363 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27187518 |
tatcagactcgtgcaaagggaggtcctcctccatcttcccaatgattatgttattttggaatgtccga |
27187585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 102 - 363
Target Start/End: Original strand, 27176954 - 27177218
Alignment:
| Q |
102 |
acgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccg |
201 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || || | ||| ||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || |
|
|
| T |
27176954 |
acgcagaggtaaatatatcgtctcaggtcccatatgttcagcctgaagcacacatcagtaaaaacatacataatggtctggatttatgggccagaattcg |
27177053 |
T |
|
| Q |
202 |
tgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctat |
298 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| ||| |
|
|
| T |
27177054 |
cgaatacgaccaacgaatggctgatgaaggcttcatgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgtattat |
27177153 |
T |
|
| Q |
299 |
caaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccga |
363 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27177154 |
cagactcgtgcaaagggaggtcctcctccatcttcccaatgattatgttattttggaatgtccga |
27177218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 553
Target Start/End: Complemental strand, 8681604 - 8681510
Alignment:
| Q |
459 |
tttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttatttat |
553 |
Q |
| |
|
|||||||||| || |||| ||| ||||||||||||||||| || || ||||||| || | ||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
8681604 |
tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcgtttttttat |
8681510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 8681684 - 8681627
Alignment:
| Q |
300 |
aaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaat |
357 |
Q |
| |
|
|||| |||||||||||||||| ||||||| | || ||||| |||||||||||||||| |
|
|
| T |
8681684 |
aaacccgtgcaaagggtggtcatcctccaactgcccaatgaatctgttatattggaat |
8681627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 99 - 360
Target Start/End: Complemental strand, 16914288 - 16914024
Alignment:
| Q |
99 |
atgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaat |
198 |
Q |
| |
|
|||||| |||||||||| || ||| |||||||||| | || |||| ||| ||||| ||||| |||||||| ||| ||| ||||||| | ||||| |
|
|
| T |
16914288 |
atgacgtagaggtaaatataccgtctcaggtcccatctgttcatcctgaagcacacatcagtaaaaacatacagaatgctctggatttattttccagaat |
16914189 |
T |
|
| Q |
199 |
ccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---c |
295 |
Q |
| |
|
|| || || ||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| || |||||| ||||||||||||||||| |
|
|
| T |
16914188 |
tcgcgaatacgaccaacgaatggttgatgaaggcttcacgcaagttctctcaaagtcgcagaagcaatctcgtaaaaatcaagtcattggcaagccgcat |
16914089 |
T |
|
| Q |
296 |
tatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtc |
360 |
Q |
| |
|
||||| || |||||||| || |||||||||||||| ||| ||||||| |||||| |||||||||| |
|
|
| T |
16914088 |
tatcagacccgtgcaaacggaggtcctcctccatcttcccaatgattatgttattttggaatgtc |
16914024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 535
Target Start/End: Complemental strand, 44453341 - 44453265
Alignment:
| Q |
459 |
tttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagattt |
535 |
Q |
| |
|
|||||||||| | |||| ||| ||||||||||||||||| | || |||||||||| ||||||||||||||||| |
|
|
| T |
44453341 |
tttggttagacaggcttccagcggagttgcatatggatttctttcgagacagaattggctttcccaattatagattt |
44453265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 151 - 342
Target Start/End: Complemental strand, 25248370 - 25248176
Alignment:
| Q |
151 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
250 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
25248370 |
acacatcagtaaaaacatacaggatggtctagatttatgggctagaatttgcgaatacgaccaacgaatggctgacgaaggcttcacgcaagtcctctta |
25248271 |
T |
|
| Q |
251 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaa---gccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgatt |
342 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||| || |||||||| |||| |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25248270 |
aagtcacagaagcaagctcgtaaaaagcaagtcattggcaaattgcattatcaaacccgtgaaaagggtggtactcctccatcttcccaatgatt |
25248176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 151 - 342
Target Start/End: Complemental strand, 25312154 - 25311960
Alignment:
| Q |
151 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
250 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
25312154 |
acacatcagtaaaaacatacaggatggtctagatttatgggctagaatttgcgaatacgaccaacgaatggctgacgaaggcttcacgcaagtcctctta |
25312055 |
T |
|
| Q |
251 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaa---gccctatcaaactcgtgcaaagggtggtcctcctccatcatccaaatgatt |
342 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||| || |||||||| |||| |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25312054 |
aagtcacagaagcaagctcgtaaaaagcaagtcattggcaaattgcattatcaaacccgtgaaaagggtggtactcctccatcttcccaatgatt |
25311960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 24056783 - 24056922
Alignment:
| Q |
180 |
ttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagca |
279 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||| ||| ||||| | ||||||||| || | || ||| || |||| || ||||||||||| |
|
|
| T |
24056783 |
ttgacttatgggccagaatccgtgaatatgaccagaaaatggatgaggaaggttacactcaagtcctatccaaatcgcagcagcagaagcttaaaaagca |
24056882 |
T |
|
| Q |
280 |
agtcattggcaagccctatcaaactcgtgcaaagggtggt |
319 |
Q |
| |
|
||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
24056883 |
agttattggcaagccttatcagacccgtgcaaagggtggt |
24056922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 24058942 - 24059010
Alignment:
| Q |
324 |
ctccatcatccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgc |
392 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
24058942 |
ctccatcttcccaatgattcttttatattggaatgttcgaggtattggcaatgtcgataccaaaattgc |
24059010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 551
Target Start/End: Complemental strand, 25247894 - 25247793
Alignment:
| Q |
450 |
aaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttat |
549 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||||||||| || || | | ||||| ||| ||| ||||| ||||||| ||||| ||||| |
|
|
| T |
25247894 |
aaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtcgtttat |
25247795 |
T |
|
| Q |
550 |
tt |
551 |
Q |
| |
|
|| |
|
|
| T |
25247794 |
tt |
25247793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 551
Target Start/End: Complemental strand, 25311678 - 25311577
Alignment:
| Q |
450 |
aaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttat |
549 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||||||||| || || | | ||||| ||| ||| ||||| ||||||| ||||| ||||| |
|
|
| T |
25311678 |
aaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtcgtttat |
25311579 |
T |
|
| Q |
550 |
tt |
551 |
Q |
| |
|
|| |
|
|
| T |
25311578 |
tt |
25311577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1821 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold1821
Description:
Target: scaffold1821; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 509 - 645
Alignment:
| Q |
230 |
ggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccc---tatcaaactcgtgcaaagggtggtcctcctc |
326 |
Q |
| |
|
|||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| ||||| ||||||||| || | |||||||||| |
|
|
| T |
509 |
ggcttcacgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcattatcagactcgtgcacagagaggtcctcctc |
608 |
T |
|
| Q |
327 |
catcatccaaatgattctgttatattggaatgtccga |
363 |
Q |
| |
|
|||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
609 |
catcttcccaatgattatgttattttggaatgtccga |
645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 515
Target Start/End: Complemental strand, 24361079 - 24361002
Alignment:
| Q |
438 |
gtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattg |
515 |
Q |
| |
|
||||||||||| |||||| |||||||||||| || |||||||| ||||| ||||||||||| | || |||||||||| |
|
|
| T |
24361079 |
gtcatgagattcaaggttatatttggttagacacgcttctagctgagttacatatggatttctttcgagacagaattg |
24361002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 17150909 - 17150945
Alignment:
| Q |
182 |
gatttatgggctagaatccgtgagtatgaccaacgaa |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
17150909 |
gatttatgggctagaattcgtgagtatgacaaacgaa |
17150945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 541
Target Start/End: Original strand, 11842505 - 11842653
Alignment:
| Q |
393 |
tttttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatat |
492 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||| |||| ||||||||| |||| ||| | |||||| |||||||||| | |||| | ||||||||| | |
|
|
| T |
11842505 |
ttttccgtgaaggtaatagctgtgcagataaattggcaaatatgggttatgatattcagggttctgtttggttagacatgcttcctgtagagttgcattt |
11842604 |
T |
|
| Q |
493 |
ggatttttaccgcgacagaattgatcttcccaattatagatttccgtag |
541 |
Q |
| |
|
|| || || || |||||||||| | ||||||||||||||||||||| |
|
|
| T |
11842605 |
cgacttctatcgagacagaattggcttacccaattatagatttccgtag |
11842653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 16013 - 15948
Alignment:
| Q |
182 |
gatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttctt |
247 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | || || ||||| ||||||||||||||| |
|
|
| T |
16013 |
gatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctt |
15948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 99237 - 99302
Alignment:
| Q |
182 |
gatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttctt |
247 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | || || ||||| ||||||||||||||| |
|
|
| T |
99237 |
gatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctt |
99302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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