View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_10 (Length: 571)

Name: NF1098_low_10
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_10
NF1098_low_10
[»] chr7 (10 HSPs)
chr7 (1-323)||(18659538-18659860)
chr7 (5-327)||(21112420-21112742)
chr7 (1-323)||(21123810-21124132)
chr7 (5-327)||(21131380-21131702)
chr7 (331-471)||(18659907-18660047)
chr7 (327-471)||(21124175-21124322)
chr7 (327-471)||(21112781-21112925)
chr7 (327-471)||(21131741-21131885)
chr7 (375-462)||(21097336-21097423)
chr7 (334-462)||(21106955-21107083)
[»] chr4 (2 HSPs)
chr4 (5-327)||(39131034-39131356)
chr4 (327-471)||(39130851-39130995)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 18659538 - 18659860
Alignment:
Q  1 ccagaagaccaatcactatggttctttactttataccctcacaaactagagcatatcttaccttcttcaggatcatagctgcaagttctgtttggaccac 100  Q
    ||||||||  ||||| |||||||||| ||||||||||||  ||||| ||||||| ||||||| | || |||||||||||||||||| || |||  |||||    
T  18659538 ccagaagagaaatcattatggttcttcactttataccctggcaaacaagagcatttcttaccctttttaggatcatagctgcaagtgctattttcaccac 18659637  T
Q  101 aaactccatgaatggtccaactattagatatgacttgccacgaaacataccaattttgtgacaagttttttcgactgtaaactcgaatattaccatcaga 200  Q
    |||||||||||||| | ||| | | || |||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  18659638 aaactccatgaatgatgcaagtgtcaggtatgacttgccatgaaacatgccaatttgctgacaagttttttcgactgtaaactcgaacattaccatcaga 18659737  T
Q  201 atcaatggttcatcttctttgcaaattaataccataatcatatgtggaaattaagtaattatcggatgaaatgaggtttccaagagaatccaacaaagca 300  Q
    ||| |||||| || |||||||||     |||||||||||||| |||||||  | ||||||||| ||||| ||||  |||||||||||||||||||| |||    
T  18659738 atccatggttaattttctttgcatgaccataccataatcataagtggaaaaaatgtaattatcagatgatatgaactttccaagagaatccaacaatgca 18659837  T
Q  301 attctcctactattgttattgga 323  Q
    ||||| |||||||||| ||||||    
T  18659838 attctactactattgtaattgga 18659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 21112420 - 21112742
Alignment:
Q  5 aagaccaatcactatggttctttactttataccctcacaaactagagcatatcttaccttcttcaggatcatagctgcaagttctgtttggaccacaaac 104  Q
    ||||||||||| |||||||||| | |||||||||   ||||| ||||||| ||||||||| || |||||||||||| ||||  || |||| ||||||||     
T  21112420 aagaccaatcattatggttcttcattttataccccggcaaacaagagcatttcttaccttttttaggatcatagctacaagcgctatttgcaccacaaat 21112519  T
Q  105 tccatgaatggtccaactattagatatgacttgccacgaaacataccaattttgtgacaagttttttcgactgtaaactcgaatattaccatcagaatca 204  Q
    |||||  ||| | ||  | | ||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||     
T  21112520 tccatctatgatgcaggtgtcagatatgacttgccatgaaacataccaattttctaacaagttttttcggctgtaaactcgaatattaccatcagaatcc 21112619  T
Q  205 atggttcatcttctttgcaaattaataccataatcatatgtggaaattaagtaattatcggatgaaatgaggtttccaagagaatccaacaaagcaattc 304  Q
    | |||| |||||||||||| |   ||||||||||||||||||||||  ||||||||||| ||||| ||||  ||||||||||||||||||||||||||||    
T  21112620 aaggttaatcttctttgcataaccataccataatcatatgtggaaaaaaagtaattatcagatgatatgaactttccaagagaatccaacaaagcaattc 21112719  T
Q  305 tcctactattgttattggacctt 327  Q
    |  ||||||||| ||||| ||||    
T  21112720 tagtactattgtaattggtcctt 21112742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 21123810 - 21124132
Alignment:
Q  1 ccagaagaccaatcactatggttctttactttataccctcacaaactagagcatatcttaccttcttcaggatcatagctgcaagttctgtttggaccac 100  Q
    ||||||||  |||||||||||||||| |||||||||||   ||||| ||||||| ||||||| | || |||||||||||||||||| || |||| |||||    
T  21123810 ccagaagagaaatcactatggttcttcactttataccccggcaaacaagagcatttcttaccctttttaggatcatagctgcaagtgctatttgcaccac 21123909  T
Q  101 aaactccatgaatggtccaactattagatatgacttgccacgaaacataccaattttgtgacaagttttttcgactgtaaactcgaatattaccatcaga 200  Q
    |||||||||||||| | ||| | | ||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||| |    
T  21123910 aaactccatgaatgatgcaagtgtcagatatgacttgccatgaaacataccaattttctgacatgttttttcgactataaactcgaacattaccatcata 21124009  T
Q  201 atcaatggttcatcttctttgcaaattaataccataatcatatgtggaaattaagtaattatcggatgaaatgaggtttccaagagaatccaacaaagca 300  Q
    ||| |||||| || ||||||||| |   |||||||||||||| |||||||    ||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  21124010 atccatggttaattttctttgcataaccataccataatcataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagca 21124109  T
Q  301 attctcctactattgttattgga 323  Q
    ||| |  ||||||||| ||||||    
T  21124110 attatggtactattgtaattgga 21124132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 21131380 - 21131702
Alignment:
Q  5 aagaccaatcactatggttctttactttataccctcacaaactagagcatatcttaccttcttcaggatcatagctgcaagttctgtttggaccacaaac 104  Q
    |||||||||||||||||||||| |||||||| |||  ||||| ||||||| | |||||    | |||||||||| ||||||  |||||||  |||||||     
T  21131380 aagaccaatcactatggttcttcactttatatcctggcaaacaagagcattttttacccatattaggatcatagatgcaagagctgtttgcgccacaaat 21131479  T
Q  105 tccatgaatggtccaactattagatatgacttgccacgaaacataccaattttgtgacaagttttttcgactgtaaactcgaatattaccatcagaatca 204  Q
    |||||| ||||| |||  || |  || ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||     
T  21131480 tccatgtatggtgcaaggatcatgtacgacttgccatgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatcc 21131579  T
Q  205 atggttcatcttctttgcaaattaataccataatcatatgtggaaattaagtaattatcggatgaaatgaggtttccaagagaatccaacaaagcaattc 304  Q
    ||| |  | |||||||||| |   || |||||||||||||||||||    ||||||||| ||||||||||  |||||||||||||| || ||||||||||    
T  21131580 atgctcaaccttctttgcataaccatgccataatcatatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattc 21131679  T
Q  305 tcctactattgttattggacctt 327  Q
    | |||||||||| |||| |||||    
T  21131680 tactactattgtaattgaacctt 21131702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 331 - 471
Target Start/End: Original strand, 18659907 - 18660047
Alignment:
Q  331 cttgaaacatcagggccatcatagttgaaacaaataacattgttatcatcaaagaacaacttatagaatccagaagaatgattactctggcttcttgaag 430  Q
    |||||||||||||| |||||||| |||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||    
T  18659907 cttgaaacatcaggaccatcataattgagacgaataacattgttatcatcaaagaaaaacttatagaagccagaagaatgattactttggctttttgaag 18660006  T
Q  431 aaacaagttttgtgtatctagtgagaggttgattaggaagg 471  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  18660007 aaacaagttttatgtatctagtgagaggttgattaggaagg 18660047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 21124175 - 21124322
Alignment:
Q  327 tgtgcttgaaacatcagggccatcatagttgaaacaaataacattgttatcatcaaagaacaacttatagaatccagaagaatgattactctggcttctt 426  Q
    ||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  21124175 tgtgcttgaaacatcagggccatcataatcgagacgaataacattgttatcatcaaagaaacacttatagaagccagaagaatgattactctggcttctt 21124274  T
Q  427 gaagaaacaagttttgtg---tatctagtgagaggttgattaggaagg 471  Q
    ||||||| ||||||||||   |||||||||||||||||||||||||||    
T  21124275 gaagaaataagttttgtgtattatctagtgagaggttgattaggaagg 21124322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 21112781 - 21112925
Alignment:
Q  327 tgtgcttgaaacatcagggccatcatagttgaaacaaataacattgttatcatcaaagaacaacttatagaatccagaagaatgattactctggcttctt 426  Q
    ||||||||||| |||||| |||||||| | || || ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  21112781 tgtgcttgaaatatcaggaccatcataatcgagacgaataacattgttatcatcaaagaacaacttataaaagccagaagaatgattactatggcttctt 21112880  T
Q  427 gaagaaacaagttttgtgtatctagtgagaggttgattaggaagg 471  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  21112881 gaagaaacaaggtttgtatatctagtgagaggttgattaggaagg 21112925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 21131741 - 21131885
Alignment:
Q  327 tgtgcttgaaacatcagggccatcatagttgaaacaaataacattgttatcatcaaagaacaacttatagaatccagaagaatgattactctggcttctt 426  Q
    |||||||||||||||||| |||||||| | || || ||| | ||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  21131741 tgtgcttgaaacatcaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagccagaagaatgattactctggcttctt 21131840  T
Q  427 gaagaaacaagttttgtgtatctagtgagaggttgattaggaagg 471  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  21131841 gaagaaacaagttttgtgtatctagtgagtggttgattaggaagg 21131885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 462
Target Start/End: Complemental strand, 21097423 - 21097336
Alignment:
Q  375 atcatcaaagaacaacttatagaatccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagaggttga 462  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||  ||| ||||||| ||||| ||||| ||||| || |||||||||    
T  21097423 atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttga 21097336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 21107083 - 21106955
Alignment:
Q  334 gaaacatcagggccatcatagttgaaacaaataacattgttatcatcaaagaacaacttatagaatccagaagaatgattactctggcttcttgaagaaa 433  Q
    |||| ||||||||||||||| |  | || || ||||||   |||||||||| | ||||| ||||| |||| ||||||||||||||  ||||||||||  |    
T  21107083 gaaatatcagggccatcataatgaagaccaagaacatttgcatcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagcta 21106984  T
Q  434 caagttttgtgtatctagtgagaggttga 462  Q
    |||| ||||| ||||| || |||||||||    
T  21106983 caagctttgtatatcttgtaagaggttga 21106955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 39131356 - 39131034
Alignment:
Q  5 aagaccaatcactatggttctttactttataccctcacaaactagagcatatcttaccttcttcaggatcatagctgcaagttctgtttggaccacaaac 104  Q
    ||||||||||| |||||||||| |||||||| |||  ||||| ||| ||  ||||||| | ||  |||| |||||| ||||| || |||  ||||||||     
T  39131356 aagaccaatcattatggttcttcactttatatccttgcaaacaagaacacttcttaccctttttcggatgatagctacaagtgctattttcaccacaaat 39131257  T
Q  105 tccatgaatggtccaactattagatatgacttgccacgaaacataccaattttgtgacaagttttttcgactgtaaactcgaatattaccatcagaatca 204  Q
    |||||||||||| ||  ||| | ||||||||||||| |||||||||||||||| | ||||  |||||||||||||||| ||||||||||||||||||||     
T  39131256 tccatgaatggtgcatgtatcatatatgacttgccatgaaacataccaattttctaacaaactttttcgactgtaaacacgaatattaccatcagaatcc 39131157  T
Q  205 atggttcatcttctttgcaaattaataccataatcatatgtggaaattaagtaattatcggatgaaatgaggtttccaagagaatccaacaaagcaattc 304  Q
    |||||| |||||||||||| |    |||| ||||||||||||||||  | ||||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  39131156 atggttaatcttctttgcataaccgtaccgtaatcatatgtggaaaaaatgtaattatcagatgaaataaactttccatgagaatccaacaaagcaattc 39131057  T
Q  305 tcctactattgttattggacctt 327  Q
    | |||||||| | |||| |||||    
T  39131056 tactactattataattgaacctt 39131034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 327 - 471
Target Start/End: Complemental strand, 39130995 - 39130851
Alignment:
Q  327 tgtgcttgaaacatcagggccatcatagttgaaacaaataacattgttatcatcaaagaacaacttatagaatccagaagaatgattactctggcttctt 426  Q
    |||||||||||||||||| |||||||| |  | || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  39130995 tgtgcttgaaacatcaggaccatcatattctagacgaataatattgttatcatcaaaaaacaacttatagaagccagaagaatgattactctgacttctt 39130896  T
Q  427 gaagaaacaagttttgtgtatctagtgagaggttgattaggaagg 471  Q
    || ||| ||||||||||||||||||||||||||||||||||||||    
T  39130895 gaggaaccaagttttgtgtatctagtgagaggttgattaggaagg 39130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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