View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_11 (Length: 526)
Name: NF1098_low_11
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 139 - 487
Target Start/End: Original strand, 20015033 - 20015380
Alignment:
| Q |
139 |
acatgttctagtatatagaggagaaatattgatatctaggannnnnnncatcctgttatcgtgttgtttatacttttaatttgcagcaatgaaggcaata |
238 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20015033 |
acatgttctaatatatagaggagaaatattgatatctaggatttttttcatcctgttatcatgttgtttatacttttaatttgcagcaatgaaggcaatc |
20015132 |
T |
|
| Q |
239 |
cgtctttttggtatggcctattttactttccaataatacctttgatagttttgggtaacttcttgcaactttcaaaaaacaatagtttcctttatatttc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20015133 |
cgtctttttggtatggcctattttactttccaataataccttcgatagttttgggtaacttcttgcaactttcaaaaaacaata-tttcctttatatttc |
20015231 |
T |
|
| Q |
339 |
actatttgtttgttattcggttccttaatctctttgttggttcccgtatagcaacccatatactgaaaaaatgtaaagagaggagaattatattgatgct |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
20015232 |
actatttgtttgttattcggttccttaatctctttgttggttcccatatagcaacctatataatgaaaaaatgtaaagagaggagaattatactgatgct |
20015331 |
T |
|
| Q |
439 |
tcaacccatatagcaagaagaaaattactatgattgtatgtatgtatgc |
487 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
20015332 |
tcaacccatatagaaagaagaaaattactatgattgtatgcatgtatgc |
20015380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 139 - 383
Target Start/End: Original strand, 23158608 - 23158851
Alignment:
| Q |
139 |
acatgttctagtatatagaggagaaatattgatatctaggannnnnnncatcctgttatcgtgttgtttatacttttaatttgcagcaatgaaggcaata |
238 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
23158608 |
acatattctaatatatagaggagaattattgatatctgggatttttttcattctgttattgtgttgtttatacatttaatttgcagcaatgaaggcaata |
23158707 |
T |
|
| Q |
239 |
cgtctttttggtatggcctattttactttccaataatacctttgatagttttgggtaacttcttgcaactttcaaaaaacaatagtttcctttatatttc |
338 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||| |
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| T |
23158708 |
ggtttttttg-tatggcctattttactttccaataatacctttgatagttttgggtaacttcttgcaacttccgaaaaacaatagttttcattatatttc |
23158806 |
T |
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| Q |
339 |
actatttgtttgttattcggttccttaatctctttgttggttccc |
383 |
Q |
| |
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||| ||| |||||||||| |||||||||||||||||||||||||| |
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| T |
23158807 |
actctttctttgttattcagttccttaatctctttgttggttccc |
23158851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 199 - 348
Target Start/End: Original strand, 18763675 - 18763824
Alignment:
| Q |
199 |
gtgttgtttatacttttaatttgcagcaatgaaggcaatacgtctttttggtatggcctattttactttccaataatacctttgatagttttgggtaact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18763675 |
gtgttgtttatacttttaatttgcagcaatgaaggcaataggtttttttggtatgacctattttactttccaataataccttcgatagttttgggtaact |
18763774 |
T |
|
| Q |
299 |
tcttgcaactttcaaaaaacaatagtttcctttatatttcactatttgtt |
348 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
18763775 |
tcttgcaacttccaaaaaacaatagtttccattatatttcactctttgtt |
18763824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 404 - 509
Target Start/End: Original strand, 23159221 - 23159326
Alignment:
| Q |
404 |
aaaaaatgtaaagagaggagaattatattgatgcttcaacccatatagcaagaagaaaattactatgattgtatgtatgtatgcttcgagttgcctagat |
503 |
Q |
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||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23159221 |
aaaaaatgtaaagagaggataattatactaatgcttcaacccatatagcaagaataaaattactatgattgtatgtatgtatgcttcgagttgcctagat |
23159320 |
T |
|
| Q |
504 |
ttcctc |
509 |
Q |
| |
|
| |||| |
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|
| T |
23159321 |
tacctc |
23159326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 18763624 - 18763660
Alignment:
| Q |
139 |
acatgttctagtatatagaggagaaatattgatatct |
175 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |
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| T |
18763624 |
acatattctaatatatagaggagaaatattgatatct |
18763660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 20014922 - 20014954
Alignment:
| Q |
28 |
cataattgctacaaacattcattaattctagca |
60 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
20014922 |
cataattgctacaaacattcattaattgtagca |
20014954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 23158313 - 23158345
Alignment:
| Q |
28 |
cataattgctacaaacattcattaattctagca |
60 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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|
| T |
23158313 |
cataattgctacaaacattcaataattctagca |
23158345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 13759628 - 13759574
Alignment:
| Q |
230 |
aaggcaatacgtctttttggtatggcctattttactttccaataatacctttgat |
284 |
Q |
| |
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|||||||||| ||| |||||| | ||||||||||||||||| ||||||| ||||| |
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|
| T |
13759628 |
aaggcaatacatctatttggtgtagcctattttactttccactaatacccttgat |
13759574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 24677088 - 24677043
Alignment:
| Q |
230 |
aaggcaatacgtctttttggtatggcctattttactttccaataat |
275 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||||||||||||||||| |
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| T |
24677088 |
aaggcaatacttcttttttgtatagcttattttactttccaataat |
24677043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 1725897 - 1725849
Alignment:
| Q |
230 |
aaggcaatacgtctttttggtatggcctattttactttccaataatacc |
278 |
Q |
| |
|
|||||||||| ||| |||||| | ||||||||||||||||| ||||||| |
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|
| T |
1725897 |
aaggcaatacatctatttggtgtagcctattttactttccactaatacc |
1725849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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