View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1098_low_12 (Length: 499)
Name: NF1098_low_12
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 6188969 - 6189170
Alignment:
| Q |
14 |
atatacacattggagtaatcattattctgtcaagaatcatgcgcgataaattatcttggctcttaaggaaatggcctgctttttgcaacttttttattag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6188969 |
atatacacattggagtaatcattattctgtcaagaatcatgcgcgataaattatcttggctcttaaggaaatggcctgctttttgcaacttttttattag |
6189068 |
T |
|
| Q |
114 |
attacatgtaatattgattatagaactaacttgtcacggtagatgtaggagatgccaacggtttaactcatatgttacagaataatgcttacaagataat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6189069 |
attacatgtaatattgattatagaactaacttgtcacagtagatgtaggagatgccaacggtttaactcatatgttacagaataatgcttacaagataat |
6189168 |
T |
|
| Q |
214 |
gc |
215 |
Q |
| |
|
|| |
|
|
| T |
6189169 |
gc |
6189170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 6189281 - 6189361
Alignment:
| Q |
376 |
tatttcacttgaatgaggtatataattattattgatcatcactaggtatttatacacttgcacaaatccacacacaattgg |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6189281 |
tatttcacttgaatgaggtatataattattattgatcatcactaggtatttatacacttgcacaaatccacacacaattgg |
6189361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 6189151 - 6189225
Alignment:
| Q |
246 |
taatgcttacaagataatgctgtgtctgttggaacaacacaattcttgattgcgcgcatacacacacggtgtgtt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6189151 |
taatgcttacaagataatgctgtgtctgttagaacaacacaattcttgattgtgcgcatacacacacggtgtgtt |
6189225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University