View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_15 (Length: 467)

Name: NF1098_low_15
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_15
NF1098_low_15
[»] chr1 (3 HSPs)
chr1 (316-439)||(17776182-17776305)
chr1 (42-138)||(17775907-17776003)
chr1 (211-250)||(17776076-17776116)
[»] chr5 (2 HSPs)
chr5 (45-105)||(26065765-26065825)
chr5 (45-137)||(7846578-7846670)
[»] chr3 (3 HSPs)
chr3 (45-116)||(44991080-44991151)
chr3 (45-107)||(55289898-55289959)
chr3 (45-106)||(34333781-34333842)
[»] chr7 (5 HSPs)
chr7 (45-137)||(8114795-8114889)
chr7 (45-107)||(4576856-4576918)
chr7 (88-137)||(31502419-31502469)
chr7 (45-137)||(8900174-8900267)
chr7 (47-133)||(39025963-39026051)
[»] chr6 (1 HSPs)
chr6 (48-105)||(17796572-17796629)
[»] chr4 (4 HSPs)
chr4 (45-85)||(8579091-8579131)
chr4 (45-85)||(8593947-8593987)
chr4 (45-105)||(49195730-49195790)
chr4 (45-85)||(50977611-50977651)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 316 - 439
Target Start/End: Original strand, 17776182 - 17776305
Alignment:
Q  316 tgtataattttgtttgtattgtattacttcacgagtgtatatttacaccaaacatgagtcgttttataggattcaaacaagtaagtgaatgatcacacat 415  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  17776182 tgtataattttgtttgtattatattacttcaggagtgtatatttacaccaaacatgagtcattttataggatacaaacaagtaagtgaatgatcacacat 17776281  T
Q  416 aattaaagaccattaacaattcat 439  Q
    |||||||| |||||||||||||||    
T  17776282 aattaaagtccattaacaattcat 17776305  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 17775907 - 17776003
Alignment:
Q  42 tggactcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaatcctattaaaaggataacagtattgacattttg 138  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||  |||||||||||||| |||||||||||    
T  17775907 tggactcataaacaaactcaaatcttcgtcatacaaacatagaagccaaaatttcattgaaaaatcctacaaaaaggataacagtgttgacattttg 17776003  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 17776076 - 17776116
Alignment:
Q  211 gatcaagaacgaaa-gtgttaccttgttataacatagagga 250  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  17776076 gatcaagaacgaaaagtgttacctggttataacatagagga 17776116  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 26065765 - 26065825
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaa 105  Q
    |||||||||||||||||||||||| ||||| || ||||||| | || ||||||||||||||    
T  26065765 actcataaacaaactcaaatcttcatcatacaagcataaaaatacatatttcattgaaaaa 26065825  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 7846578 - 7846670
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaatcctattaaaaggataacagtattgacatttt 137  Q
    |||| |||| |||||||||||| | ||||| |||| || ||  | ||||||||||||||||||| || ||| |||||||| | ||||||||||    
T  7846578 actcgtaaagaaactcaaatctccatcatacaaacgtataaacctaaatttcattgaaaaatcccataaaagggataacaatgttgacatttt 7846670  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 44991151 - 44991080
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaatcctattaaaa 116  Q
    |||||||||||||||| ||||||| ||||| ||||||| ||   |||||||||||||||||| |||| ||||    
T  44991151 actcataaacaaactcgaatcttcatcatacaaacatagaaactcaaatttcattgaaaaattctataaaaa 44991080  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 55289898 - 55289959
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaatc 107  Q
    ||||||||||||||||||||| |||||||| |||||| | || |||| |||||||||||||||    
T  55289898 actcataaacaaactcaaatcctcgtcatacaaacat-atagcccaattttcattgaaaaatc 55289959  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 34333842 - 34333781
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaat 106  Q
    |||||||||||||||||| ||||| ||||| |||| || || |||| |||||||||||||||    
T  34333842 actcataaacaaactcaactcttcatcatacaaacctataaatccagatttcattgaaaaat 34333781  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 8114795 - 8114889
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattg-aaaaatcctatt-aaaaggataacagtattgacatttt 137  Q
    |||||||||||||| ||||||||| || || ||| ||||||  || |||||||||| |||||||| ||| |||||||||||| | ||||||||||    
T  8114795 actcataaacaaacccaaatcttcatcttacaaaaataaaaacccgaatttcattgaaaaaatccaattaaaaaggataacaatgttgacatttt 8114889  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 4576918 - 4576856
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaatc 107  Q
    |||||||||||||||||||| ||| || || |||||||| | | ||||||||||| |||||||    
T  4576918 actcataaacaaactcaaattttcatcgtacaaacataacaattcaaatttcattaaaaaatc 4576856  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 31502419 - 31502469
Alignment:
Q  88 ccaaatttcattgaaaa-atcctattaaaaggataacagtattgacatttt 137  Q
    ||||||||||||||||| ||||||||||||  |||||| ||||||||||||    
T  31502419 ccaaatttcattgaaaaaatcctattaaaaaaataacaatattgacatttt 31502469  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 8900267 - 8900174
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcatt-gaaaaatcctattaaaaggataacagtattgacatttt 137  Q
    |||||||||||||||||||| ||| ||||| ||||||| ||  ||||||||| ||  |||||||  || ||||||  |||||| ||||||||||    
T  8900267 actcataaacaaactcaaattttcatcatacaaacatagaaacccaaatttctttaaaaaaatctcataaaaaggcgaacagtgttgacatttt 8900174  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 39025963 - 39026051
Alignment:
Q  47 tcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattg--aaaaatcctattaaaaggataacagtattgaca 133  Q
    ||||||||||| ||||||||||| | || ||||||| ||   ||||||||||||  |||||||| || |||||||||||| | ||||||    
T  39025963 tcataaacaaattcaaatcttcgccgtacaaacatagaaactcaaatttcattgaaaaaaatcccataaaaaggataacaatgttgaca 39026051  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 17796629 - 17796572
Alignment:
Q  48 cataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaa 105  Q
    |||||| |||||||||||||||||| | |||||||||| | || ||||||||||||||    
T  17796629 cataaataaactcaaatcttcgtcaaacaaacataaaaatacatatttcattgaaaaa 17796572  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 8579131 - 8579091
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaa 85  Q
    |||||||||||||||||||||||| ||||| |||| |||||    
T  8579131 actcataaacaaactcaaatcttcatcatacaaacttaaaa 8579091  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 8593987 - 8593947
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaa 85  Q
    |||||||||||||||||||||||| ||||| |||| |||||    
T  8593987 actcataaacaaactcaaatcttcatcatacaaacttaaaa 8593947  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 49195730 - 49195790
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaagtccaaatttcattgaaaaa 105  Q
    ||||||||| |||||||||||||| ||||| ||||||| || |  | ||||||||||||||    
T  49195730 actcataaataaactcaaatcttcatcatacaaacatagaaatttatatttcattgaaaaa 49195790  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 50977611 - 50977651
Alignment:
Q  45 actcataaacaaactcaaatcttcgtcatataaacataaaa 85  Q
    |||||||||||||||||||||||| ||||| |||| |||||    
T  50977611 actcataaacaaactcaaatcttcatcatacaaacctaaaa 50977651  T

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