View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1098_low_17 (Length: 462)
Name: NF1098_low_17
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 97 - 403
Target Start/End: Complemental strand, 8793937 - 8793630
Alignment:
| Q |
97 |
acttcacaattcaaatgtccagtgaatgaacgaaaggtcaaacacctgaacaaccaaccattatatcgctcttgcaaagtatactctctatgttgctatg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8793937 |
acttcacaattcaaatgtccagtgaatgaacgaaaggtcaaacacctgaacaaacaaccattatatggctcttgcaaagtatactctctatgttgctatg |
8793838 |
T |
|
| Q |
197 |
tacttaatagattgtttttccnnnnnnntatgttttgattaataagcaaattttaaacatatactcctgtctttaaataattataaagtaattgatagag |
296 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
8793837 |
tacttaatagattgtttttccaaaaaaatatgttttgattaataagcaaattttaaacatatactcttgtcttttaataattataaagtaattgatagag |
8793738 |
T |
|
| Q |
297 |
aaagagtataactgat-nnnnnnntattgtatataaaaaatcatgttgagagatatcgacctcttaaatgcatctcaatttatttagtactatgatgtta |
395 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8793737 |
aaagagtataactgataaaaaaaatattatatataaaaaatcatgttgagagatatcgacctcttaaatgtatctcaatttatttagtactatgatgtta |
8793638 |
T |
|
| Q |
396 |
agaatgga |
403 |
Q |
| |
|
||| |||| |
|
|
| T |
8793637 |
agagtgga |
8793630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University