View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_18 (Length: 446)
Name: NF1098_low_18
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 73 - 414
Target Start/End: Complemental strand, 48866641 - 48866301
Alignment:
| Q |
73 |
taagcgtgagaaccattcagctaggcttgtaagcctgaaataggcaaacatcagaataaggccctaattaattcaattgggaaagagattgcttccgcag |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48866641 |
taagcgtgagaaccattcagctaggcttgtaagcctgaaataggcaaacatcagaataaggccctaattaattcaattgggaaagagattgcttccgcag |
48866542 |
T |
|
| Q |
173 |
ccttgaaaacatacaacaaactgtatggtttgacaaaaataatacaatcaatacagcagcaaccggtatggtttgaccaagacttaaagttcaacaaaac |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48866541 |
ccttgaaaacatacaacaaactgtatggtttgacaaaaataatacaatcaatacagcagcaaccggtatggtttgaccaagacttaaagttcaacaaaac |
48866442 |
T |
|
| Q |
273 |
tcacgtcccatcatatttttgtcttgatagagaaatgctgaaatgtgcagccaaaaagaggtgtaatccagagataggtcagccaatggtgatctcaaaa |
372 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48866441 |
tcacgtcccatcatatttttgtctt-atagagaaatgctgaaatgtgcagccaaaaagaggtgtgatccagagataggtcagccaatggtgatctcaaaa |
48866343 |
T |
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| Q |
373 |
atcaaaatgtatgaagggtggttggaatatcaaattgacagg |
414 |
Q |
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| T |
48866342 |
atcaaaatgtatgaagggtggttggaatatcaaattgacagg |
48866301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 74 - 317
Target Start/End: Complemental strand, 48873616 - 48873380
Alignment:
| Q |
74 |
aagcgtgagaaccattcagctaggcttgtaagcctgaaataggcaaacatcagaataaggccctaattaattcaattgggaaagagattgcttccgcagc |
173 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
48873616 |
aagcatgagaaccattcagctaggcttgtaagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagc |
48873517 |
T |
|
| Q |
174 |
cttgaaaacatacaacaaactgtatggtttgacaaaaataatacaatcaatacagcagcaaccggtatggtttgaccaagacttaaagttcaacaaaact |
273 |
Q |
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| T |
48873516 |
cttgaaaacatacatataa----aaggtctgacaaaaataacaccaccaata---cagcaatctatatggtttgaccaagacttaaagttcaacaaaact |
48873424 |
T |
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| Q |
274 |
cacgtcccatcatatttttgtcttgatagagaaatgctgaaatg |
317 |
Q |
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| T |
48873423 |
cgtgtcccatcatatttttgttttgataaagaaatgctgaaatg |
48873380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 74 - 317
Target Start/End: Complemental strand, 48878920 - 48878684
Alignment:
| Q |
74 |
aagcgtgagaaccattcagctaggcttgtaagcctgaaataggcaaacatcagaataaggccctaattaattcaattgggaaagagattgcttccgcagc |
173 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
48878920 |
aagcatgagaaccattcagctaggcttgtaagcctgaaataggcaaacaccagagtaaggccctaattaattcaattgggaaagaggttgcttccacagc |
48878821 |
T |
|
| Q |
174 |
cttgaaaacatacaacaaactgtatggtttgacaaaaataatacaatcaatacagcagcaaccggtatggtttgaccaagacttaaagttcaacaaaact |
273 |
Q |
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|||||||||||||| || | ||| |||||||||||| || | ||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
48878820 |
cttgaaaacatacatataa----aaggtctgacaaaaataacaccaccaata---cagcaatctatatggtttgaccaagacttaaagttcaacaaaact |
48878728 |
T |
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| Q |
274 |
cacgtcccatcatatttttgtcttgatagagaaatgctgaaatg |
317 |
Q |
| |
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| |||||||||||||||||| |||||| ||||||||||||||| |
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| T |
48878727 |
cgtgtcccatcatatttttgttttgataaagaaatgctgaaatg |
48878684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 48841813 - 48841917
Alignment:
| Q |
81 |
agaaccattcagctaggcttgtaagcctgaaataggcaaacatcagaataaggccctaattaattcaattgggaaagagattgcttccgcagccttgaaa |
180 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||| || ||||||||||| || |||||||| |
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| T |
48841813 |
agaaccactcagctaggcttgttagcctgaaataggcaaacacaaaaataaggccctctataattcaattgggcaaaagattgcttccacaaccttgaaa |
48841912 |
T |
|
| Q |
181 |
acata |
185 |
Q |
| |
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||||| |
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| T |
48841913 |
acata |
48841917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 48856883 - 48856820
Alignment:
| Q |
351 |
tcagccaatggtgatctcaaaaatcaaaatgtatgaagggtggttggaatatcaaattgacagg |
414 |
Q |
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||||||||| ||||||||| ||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
48856883 |
tcagccaatagtgatctcagaaatcaaaatgtaagaggggtcgttggaatatcaaattgacagg |
48856820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 35647229 - 35647292
Alignment:
| Q |
74 |
aagcgtgagaaccattcagctaggcttgtaagcctgaaataggcaaacatcagaataaggccct |
137 |
Q |
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|||| ||||||||| |||||||||||||| ||||||||||||||||||| || | ||||||||| |
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| T |
35647229 |
aagcatgagaaccactcagctaggcttgttagcctgaaataggcaaacaccaaagtaaggccct |
35647292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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