View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_2 (Length: 978)

Name: NF1098_low_2
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_2
NF1098_low_2
[»] chr4 (9 HSPs)
chr4 (13-382)||(35791195-35791559)
chr4 (692-827)||(35790873-35791008)
chr4 (303-620)||(35780683-35781013)
chr4 (507-623)||(35791077-35791193)
chr4 (121-271)||(35782045-35782191)
chr4 (692-828)||(35779103-35779233)
chr4 (13-106)||(35782183-35782276)
chr4 (816-889)||(35790702-35790775)
chr4 (121-222)||(35784976-35785071)
[»] chr2 (1 HSPs)
chr2 (13-130)||(3334973-3335090)
[»] chr1 (1 HSPs)
chr1 (764-829)||(49781890-49781953)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 35791559 - 35791195
Alignment:
Q  13 aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35791559 aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctaca 35791460  T
Q  113 tggagaaacacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatag 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35791459 tggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatag 35791360  T
Q  213 caatagctaatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaagagt-ttttgctcacggcctaccaaagcgttatgttatttta 311  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35791359 caatagctaatagtctaatcatgtctaatatgacaagtattccaagataacgaataaagagttttttgctcacggcctaccaaagcgttatgttatttta 35791260  T
Q  312 ctcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaata 382  Q
    |||||||||||||||||||||||||||||||||||||||| ||      ||||||||||||||||||||||    
T  35791259 ctcttgagatcctatgcattgtcaatgcaatatactactaata------tcttattaatgtaggttcaata 35791195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 692 - 827
Target Start/End: Complemental strand, 35791008 - 35790873
Alignment:
Q  692 tcaattcattaaattttctaattcaaaggtatagatagatagatacaaatgaagagagaaaagctatagtttgcacatatttatgacttagagatttaca 791  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  35791008 tcaattcattaaattttctaattcaaaggtatagatagatagatacaaatgaagagagaaaagttatagtttgcacatatttatgactcagagatttaca 35790909  T
Q  792 tttgaattttaaattgaccattaaaactaactagga 827  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35790908 tttgaatttcaaattgaccattaaaactaactagga 35790873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 303 - 620
Target Start/End: Complemental strand, 35781013 - 35780683
Alignment:
Q  303 gttattttactcttgagatcctatgcattgtcaatgcaatatactactactaatatcttcttattaatgtaggttcaatatgtcatttcacataaa---- 398  Q
    |||||||||||||| | ||||||| |||||| |||||||||||||| || ||      ||||||||||||||||||||||||||||||||||||||        
T  35781013 gttattttactcttcatatcctatccattgtgaatgcaatatactagtaata------tcttattaatgtaggttcaatatgtcatttcacataaacttg 35780920  T
Q  399 -----attggcaaaaataaggaaaagatatcaataatgcttaagaagacaatgtgaatctataatatactataccaaaattgagtaatggaatgtnnnnn 493  Q
         ||||||||||||||| ||||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||         
T  35780919 caaaaattggcaaaaataagaaaaagatatcaataatgtttaagaagacaatgtgaat-------atactataccaaaattgagtaatggaatgtcaaaa 35780827  T
Q  494 nnnnnnttatacataaagagtaacacaatttaaggtagggaatacacatctaa------------------acctgctggaataaaatacaaacaaacgt 575  Q
          |||||| ||||||| ||||||||||||||||||||||||||||||||                  |||||||||||||||||| ||||||||||    
T  35780826 aaaa--ttatacttaaagagcaacacaatttaaggtagggaatacacatctaacacatgacggccttcaaaacctgctggaataaaatagaaacaaacgt 35780729  T
Q  576 gtccatgaacacgta-ttatatgaaatatatgttgtttgacaaata 620  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  35780728 gtccatgaacacgtatttatatgaaatatatgttgtttgacaaata 35780683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 507 - 623
Target Start/End: Complemental strand, 35791193 - 35791077
Alignment:
Q  507 taaagagtaacacaatttaaggtagggaatacacatctaaacctgctggaataaaatacaaacaaacgtgtccatgaacacgtattatatgaaatatatg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35791193 taaagagtaacacaatttaaggtagggaatacacatctaaacctgctggaataaaatacaaacaaacgtgtccatgaacacatattatatgaaatatatg 35791094  T
Q  607 ttgtttgacaaatacga 623  Q
    |||||||||||||||||    
T  35791093 ttgtttgacaaatacga 35791077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 121 - 271
Target Start/End: Complemental strand, 35782191 - 35782045
Alignment:
Q  121 cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct 220  Q
    ||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  35782191 cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact 35782095  T
Q  221 aatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaag 271  Q
    |||||||| |||||||| |||||| |||||||| |||||||||||||||||    
T  35782094 aatagtctgatcatgtc-aatatggcaagtattacaagataacgaataaag 35782045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 692 - 828
Target Start/End: Complemental strand, 35779233 - 35779103
Alignment:
Q  692 tcaattcattaaattttctaattcaaaggtatagatagatagatacaaatgaagagagaaaagctatagtttgcacatatttatgacttagagatttaca 791  Q
    ||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||   |||||||||||||| ||||||| |||  ||||||    
T  35779233 tcaattcattaaattttctaaatcgaaggtataaatagatag-tacaaatgaagagagaaaag---tagtttgcacatatctatgactcaga--tttaca 35779140  T
Q  792 tttgaattttaaattgaccattaaaactaactaggag 828  Q
    ||||||||| |||||||||||||||||||||||||||    
T  35779139 tttgaatttcaaattgaccattaaaactaactaggag 35779103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 35782276 - 35782183
Alignment:
Q  13 aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctt 106  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  35782276 aataccaaaggcttacgtttgcaacatttagaggagcaggtcatgcagttccatgtttcaaaccaagcaactcacttgtgtttttcacctcctt 35782183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 816 - 889
Target Start/End: Complemental strand, 35790775 - 35790702
Alignment:
Q  816 aactaactaggagggtttaagtattactccaacaccttgaacttttgttaatccatctttccttggaatggtat 889  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  35790775 aactaactaggagggtttaagtattactccaacaccttgaacttttgttaatccatctttctttgcaatggtat 35790702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 35785071 - 35784976
Alignment:
Q  121 cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct 220  Q
    |||||||||||||||||||||      |||||||| |||| ||||||| ||||||||| ||||| |  ||||||||||| ||||||||||| ||||||||    
T  35785071 cacctccttctacaaaataat------tcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagct 35784978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 3334973 - 3335090
Alignment:
Q  13 aatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctaca 112  Q
    ||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||   || |||||| ||||||| |     
T  3334973 aatatgaaggacttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcacttaaattcttcaccacctttcttct 3335072  T
Q  113 tggagaaacacctccttc 130  Q
    ||||||| |||| |||||    
T  3335073 tggagaatcaccaccttc 3335090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 764 - 829
Target Start/End: Original strand, 49781890 - 49781953
Alignment:
Q  764 gcacatatttatgacttagagatttacatttgaattttaaattgaccattaaaactaactaggagg 829  Q
    |||| |||||||||||  ||||||||||||||||||| ||||||| ||  | ||||||||||||||    
T  49781890 gcacttatttatgact--gagatttacatttgaatttcaaattgatcaacataactaactaggagg 49781953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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