View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1098_low_21 (Length: 412)
Name: NF1098_low_21
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 41043273 - 41043673
Alignment:
| Q |
1 |
agttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41043273 |
agttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaatttttttccctttggcat |
41043372 |
T |
|
| Q |
101 |
ttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41043373 |
ttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcctta |
41043472 |
T |
|
| Q |
201 |
tatttgcttggtggatctggaggcgctgatggaaataggggtccttgtttcacagatttcttgcgcgaaaaggttcgagacagctgcttttgcagtccct |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41043473 |
tatttgcttggtggatctggaggcgttgatggaaataggggtccttgtttcacagatttcttgcgcgaaaaggttcgagacagctgcttttgcagtccct |
41043572 |
T |
|
| Q |
301 |
ctgaaccttttttagccaaatctcttgcttgtttccatttttcgcgagcctgtaccgtttctcttacgtgttttgctgcagcttctcttgattttgcctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41043573 |
ctgaaccttttttagccaaatctcttgcttgtttccatttttcgcgagcctgtaccgtttctcttacgtgttttgctgcagcttctcttgattttgcctt |
41043672 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
|
| |
|
|
| T |
41043673 |
t |
41043673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 28087150 - 28087022
Alignment:
| Q |
1 |
agttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttggcat |
100 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || || || | ||| ||||||||||| |
|
|
| T |
28087150 |
agttattgtttttctcttgttgagctttctccttctcaatctgaccataagcatatcttaaaatttgactttgcgtatgtaaattttttccctttggcat |
28087051 |
T |
|
| Q |
101 |
ttgctttttaatgttcttgtcaccaatct |
129 |
Q |
| |
|
|||||||||||| || ||||| ||||||| |
|
|
| T |
28087050 |
ttgctttttaatatttttgtccccaatct |
28087022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 28086769 - 28086715
Alignment:
| Q |
340 |
tttcgcgagcctgtaccgtttctcttacgtgttttgctgcagcttctcttgattt |
394 |
Q |
| |
|
|||| ||||| ||||| |||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
28086769 |
tttctcgagcttgtacagtttctctcacctgtcttgctgcagcttctcttgattt |
28086715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University