View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_25 (Length: 389)
Name: NF1098_low_25
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 50460658 - 50461017
Alignment:
| Q |
1 |
caccgcaactgaggtctagcgcaaatgattgacgcatagcataactaattgagtgttgaaaactttgggtatcgaaattggttcttagtgatatattctt |
100 |
Q |
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| T |
50460658 |
caccgcaactgagatctaacgcaaatgattgacgcatagcataactaattgagtgttgtaaactttgggtatcgagattggttcttagtgatatattctt |
50460757 |
T |
|
| Q |
101 |
gtgctgcccggtcaggaattgggttttggactcaccccgccttatttggcacctacaacaattggaccagtgattttgaagggtgtcaattatgcctctg |
200 |
Q |
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| T |
50460758 |
gtgctgccaggtcaggaattgggttttggactcaccccgccttatttggcacctacaacaattggaccagtgattttgaagggtgtcaattatgcctctg |
50460857 |
T |
|
| Q |
201 |
gtgggggtggaattctcaatcacactggacaagtctttgtaagtttttgcttcatttgctctcatgatttcattttaatctcataattatgcatggaata |
300 |
Q |
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| T |
50460858 |
gtgggggtggaattctcaatcacactggacaagtctttgtaagtttttgcttcatttgctctcatgatttcattttaatctcataattatgcatggaata |
50460957 |
T |
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| Q |
301 |
ataacaataataatgtacttgtgattttatttatatagggtggtcgactcaacatggatg |
360 |
Q |
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| T |
50460958 |
ataacaataataatgtacttgtgattttatttatatagggtggtcgactcaacatggatg |
50461017 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 12940781 - 12940701
Alignment:
| Q |
170 |
gtgattttgaagggtgtcaattatgcctctggtgggggtggaattctcaatcacactggacaagtctttgtaagtttttgc |
250 |
Q |
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| T |
12940781 |
gtgattctaaagggtgtcaattatgcttctgctgcagctggaattctcaattacactggtcacatttttgtaagtttttgc |
12940701 |
T |
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