View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_27 (Length: 344)

Name: NF1098_low_27
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_27
NF1098_low_27
[»] chr1 (3 HSPs)
chr1 (89-315)||(10033347-10033573)
chr1 (8-90)||(10034274-10034356)
chr1 (8-90)||(10020609-10020689)
[»] chr4 (3 HSPs)
chr4 (221-315)||(41067757-41067851)
chr4 (185-220)||(41067694-41067729)
chr4 (95-185)||(8656683-8656773)
[»] chr3 (3 HSPs)
chr3 (221-315)||(8479391-8479485)
chr3 (89-185)||(2899284-2899380)
chr3 (185-219)||(8479322-8479356)
[»] chr5 (2 HSPs)
chr5 (221-315)||(19936715-19936809)
chr5 (185-220)||(19936843-19936878)
[»] chr2 (2 HSPs)
chr2 (95-185)||(32235006-32235096)
chr2 (136-185)||(30418630-30418679)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 10033573 - 10033347
Alignment:
Q  89 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattgatg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033573 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgttccggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattgatg 10033474  T
Q  189 aagtgcagacagacttgcaaatggacaaagcggacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgc 288  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033473 aagtgcagacagacttgcaattggacaaagcggacatcagtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgc 10033374  T
Q  289 agaagtcgcaactccacaggaaaatgt 315  Q
    |||||||||||||||||||||||||||    
T  10033373 agaagtcgcaactccacaggaaaatgt 10033347  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 10034356 - 10034274
Alignment:
Q  8 tagcataggttaacataacaataagggtggtttgaaaaaggcttagagtatcagaaaatgtgcctcgtgtgtaagaaagtacg 90  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10034356 tagcaaaggttaacataacaataagggtggtttgaaaaaggcttagagtaccagaaaatgtgcctcgtgtgtaagaaagtacg 10034274  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 10020689 - 10020609
Alignment:
Q  8 tagcataggttaacataacaataagggtggtttgaaaaaggcttagagtatcagaaaatgtgcctcgtgtgtaagaaagtacg 90  Q
    ||||| ||| |||||||||||||||||||| |||||| |  ||||||||| ||| ||||||||||||||||||||||||||||    
T  10020689 tagcaaaggataacataacaataagggtggcttgaaaga--cttagagtaccagcaaatgtgcctcgtgtgtaagaaagtacg 10020609  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 41067757 - 41067851
Alignment:
Q  221 gacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgt 315  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41067757 gacatcggtatcaatcaaaagatgctgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgt 41067851  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 41067694 - 41067729
Alignment:
Q  185 gatgaagtgcagacagacttgcaaatggacaaagcg 220  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41067694 gatgaagtgcagacagacttgcagatggacaaagcg 41067729  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 8656773 - 8656683
Alignment:
Q  95 cgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||| |||||||||||||||||||||   |  ||| ||   |||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  8656773 cgtgcctatgataaagaaaatgcagccagccaatttattccagttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 8656683  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 8479391 - 8479485
Alignment:
Q  221 gacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgt 315  Q
    ||||||||||||||||||||||  |||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  8479391 gacatcggtatcaatcaaaagatgctgctttcaacatctgttcatattattgaggaaattgtagatgcagaagtcgcaactccacaggaaaatgt 8479485  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 2899284 - 2899380
Alignment:
Q  89 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||| ||||| |||||||||||||||||||||   |  ||| ||| ||||||||| ||||||||| ||||||| |||||||  |||||||| ||||    
T  2899284 cgtatccgtgcctatgataaagaaaatgcagccaaccaatttatttcggttttatcaaagaaacagaagcaacatgtcaagaaacaacttcaaattg 2899380  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 8479322 - 8479356
Alignment:
Q  185 gatgaagtgcagacagacttgcaaatggacaaagc 219  Q
    ||||||||||||||||||||||| |||||||||||    
T  8479322 gatgaagtgcagacagacttgcagatggacaaagc 8479356  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 19936809 - 19936715
Alignment:
Q  221 gacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgt 315  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||    
T  19936809 gacatcggtatcaatcaaaagatgctgccctcaacatctgttcatgttcttgaggaaactgtagacgcagaagtcgcaactccacaagaaaatgt 19936715  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 19936878 - 19936843
Alignment:
Q  185 gatgaagtgcagacagacttgcaaatggacaaagcg 220  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19936878 gatgaagtgcagacagacttgcagatggacaaagcg 19936843  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 32235096 - 32235006
Alignment:
Q  95 cgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||| |||||||||||||||||||||   |  ||| ||  ||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  32235096 cgtgcctatgataaagaaaatgcagccagccaatttattctggttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 32235006  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 30418630 - 30418679
Alignment:
Q  136 ggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  30418630 ggttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 30418679  T

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