View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_28 (Length: 334)
Name: NF1098_low_28
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_28 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 69 - 334
Target Start/End: Complemental strand, 35632884 - 35632619
Alignment:
| Q |
69 |
agcaggaccacagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagca |
168 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35632884 |
agcagaaccagagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagca |
35632785 |
T |
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| Q |
169 |
gctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaacacag |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35632784 |
gctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaacacgg |
35632685 |
T |
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| Q |
269 |
gcttgtttagtcttaagaaaatgaaaataattctgtgnnnnnnnatcgatgacgcatttgagtctt |
334 |
Q |
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| T |
35632684 |
gcttgtttagtcttaagaaaatgaaaataattctgtgtttttttatcgatgacgaatttgagtctt |
35632619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 35629730 - 35629549
Alignment:
| Q |
69 |
agcaggaccacagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagca |
168 |
Q |
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||||| |||| ||||| |||||||||||||||| | | ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||| |
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| T |
35629730 |
agcagaaccagagatgcgtactagagttttaacatatagtgacaagtttcttatatttgcttctgatggactttgggatttcttgtcaaatgaacaagca |
35629631 |
T |
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| Q |
169 |
gctgaaattgttcaaaagaatccaagaaatgta--tgtatatatccatatctatgacttgttcttttcttggtttttccttt |
248 |
Q |
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| T |
35629630 |
gttgaaattgttcaaaacaatccaagaaatgtaagtatatatatcgatttctatgactttttcttttcttggtttttccttt |
35629549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 35636126 - 35635967
Alignment:
| Q |
89 |
ctagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagcagctgaaattgttcaaaagaa |
188 |
Q |
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|||||| |||||||||||| ||||||||||| |||||||| |||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||| || |
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| T |
35636126 |
ctagagatttaacagagaacgataagtttctgatatttgcttctgatggactttgggatttcttgtcaaatgaacaagcagttgaaattgttcaaaacaa |
35636027 |
T |
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| Q |
189 |
tccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttt |
248 |
Q |
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| T |
35636026 |
ttcaagaaatatatgtgtatatcgatttctatgactttttcttttctttatttttccttt |
35635967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 10338441 - 10338560
Alignment:
| Q |
95 |
ttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagcagctgaaattgttcaaaagaatccaag |
194 |
Q |
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|||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
10338441 |
ttttaacagagagtaataagtttcatatatttgcctctgttggactttgggagttcttgtcaaatgagctagcagttgaaattgttcaaaagaatccaag |
10338540 |
T |
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| Q |
195 |
aaatgtatgtatatatccat |
214 |
Q |
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| T |
10338541 |
aaatgtatgtatatatccat |
10338560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 10299115 - 10299340
Alignment:
| Q |
69 |
agcaggaccacagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagca |
168 |
Q |
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||||| |||| ||||| |||||||||||||||||| |||||||||||| |||||||||| |||| |||||||||||| |||||||||||| | |||| |
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| T |
10299115 |
agcagaaccagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagct |
10299214 |
T |
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| Q |
169 |
gctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaacac-- |
266 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || |||| ||| |||||| |
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| T |
10299215 |
gctgaaattgttcaaaagaatcctagaaatgtatgtat------atatctataacttgttcttttcttgatttttccattcacattgagaagaaacacga |
10299308 |
T |
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| Q |
267 |
aggcttgtttagtcttaagaaaatgaaaataa |
298 |
Q |
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| T |
10299309 |
agacttatttagcctttagaaaatgaaaataa |
10299340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 10319547 - 10319772
Alignment:
| Q |
69 |
agcaggaccacagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagca |
168 |
Q |
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||||| |||| ||||| |||||||||||||||||| |||||| ||||| |||||||||| |||| |||||||||||| |||||||||||| | |||| |
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| T |
10319547 |
agcagaaccagagatgcatactagagttttaacagataatgatcagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagct |
10319646 |
T |
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| Q |
169 |
gctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaacac-- |
266 |
Q |
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| T |
10319647 |
gctgaaattgttcaaaagaatcctagaaatgtatgtat------atatctataacttgttcttttcttgatttttccattcacattgagaagaaacacga |
10319740 |
T |
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| Q |
267 |
aggcttgtttagtcttaagaaaatgaaaataa |
298 |
Q |
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|| ||| ||||| ||| ||||||||||||||| |
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| T |
10319741 |
agacttatttagcctttagaaaatgaaaataa |
10319772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 10336663 - 10336888
Alignment:
| Q |
69 |
agcaggaccacagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagca |
168 |
Q |
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||||| |||| ||||| |||||||||||||||||| |||||| ||||| |||||||||| |||| |||||||||||| |||||||||||| | |||| |
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| T |
10336663 |
agcagaaccagagatgcatactagagttttaacagataatgatcagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagct |
10336762 |
T |
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| Q |
169 |
gctgaaattgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaacac-- |
266 |
Q |
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||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||| || |||| ||| |||||| |
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| T |
10336763 |
gctgaaattgttcgaaagaatcctagaaatgtatgtat------atatctataacttgttcttttcttgatttttccattcacattgagaagaaacacga |
10336856 |
T |
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| Q |
267 |
aggcttgtttagtcttaagaaaatgaaaataa |
298 |
Q |
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|| ||| ||||| ||| ||||||||||||||| |
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| T |
10336857 |
agacttatttagcctttagaaaatgaaaataa |
10336888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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