View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_29 (Length: 330)
Name: NF1098_low_29
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 98 - 264
Target Start/End: Original strand, 32461179 - 32461345
Alignment:
| Q |
98 |
cataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctggagaaatatcaaaattttgagcatgacccatgtgagaa |
197 |
Q |
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| T |
32461179 |
cataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctggagaaatatcaaaattttgagcatgacccatgtgagaa |
32461278 |
T |
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| Q |
198 |
attgccatgaacaaaatagtgagaagagggaagatgaaaatattcattgtcctcataatattcttgg |
264 |
Q |
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| T |
32461279 |
attgccatgaacaaaatagtgagaagagggaagatgaaaatattcattgtcctcataattttcttgg |
32461345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 97 - 265
Target Start/End: Original strand, 32456683 - 32456851
Alignment:
| Q |
97 |
acataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctggagaaatatcaaaattttgagcatgacccatgtgaga |
196 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32456683 |
acataagagaataagcaattccttgatccagaatctgagcatcactagtaggagtaggtgctggagaaatatcaaaattctgagcatgacccatgtgaga |
32456782 |
T |
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| Q |
197 |
aattgccatgaacaaaatagtgagaagagggaagatgaaaatattcattgtcctcataatattcttgga |
265 |
Q |
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| T |
32456783 |
aattgccatgaacaaaatagtgagtagtgggaagatgaaaatgttcattgtcttcataattttcttgga |
32456851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 253
Target Start/End: Original strand, 32440068 - 32440224
Alignment:
| Q |
97 |
acataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctggagaaatatcaaaattttgagcatgacccatgtgaga |
196 |
Q |
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|||||||| || |||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |
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| T |
32440068 |
acataagaaaacaagcaattacttgatccagaatctgagcaccaccggtaggagtaggtgctggagaaatatcaaaaattttagcatgacccatatgaga |
32440167 |
T |
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| Q |
197 |
aattgccatgaacaaaatagtgagaagagggaagatgaaaatattcattgtcctcat |
253 |
Q |
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|||| |||||||||||||| | |||| ||||||||||| |||||||||||| |||| |
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| T |
32440168 |
aattcccatgaacaaaatacttagaattgggaagatgaatatattcattgtcttcat |
32440224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 32463860 - 32463971
Alignment:
| Q |
97 |
acataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctggagaaatatcaaaattttgagcatgacccatgtgaga |
196 |
Q |
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|||||||| | ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||| ||||| |
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| T |
32463860 |
acataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagaaggtgctggagacatatcaaaaccttgagcttgacccaaatgaga |
32463959 |
T |
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| Q |
197 |
aattgccatgaa |
208 |
Q |
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||||||||||| |
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| T |
32463960 |
gattgccatgaa |
32463971 |
T |
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