View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_3 (Length: 846)
Name: NF1098_low_3
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 4 - 477
Target Start/End: Original strand, 7450043 - 7450513
Alignment:
| Q |
4 |
aggcgatgcaccttagtctgatggacgttcgatccacgtgtcaatgttggactggttctctagccgtcctaagcaccatccaatcaccaatatgctccat |
103 |
Q |
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| T |
7450043 |
aggcgatgcaccttagtttgatggacgttcggtccacgtgtcaatgttggactggttctctagccgtcctaagcaccatccaatcaccaatatgctccat |
7450142 |
T |
|
| Q |
104 |
ttaattgattcgttgacccacatattatccagaaagccaaatcataaagtttgatcagggtgtgcttgagaaccacgaaacaatccatgacataaagttt |
203 |
Q |
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| T |
7450143 |
ttaattgattcgttgacgcacatattatccagagagccaaatcataaagtttgatcagggtgtgcttgagaaccacgaaacaatccatgacataaagttt |
7450242 |
T |
|
| Q |
204 |
aaaataaaaagtagaaggaaggagcgggtgagaaatcctgtaggttatcttcggatcaaagaacacctgagagattaaacctagctaggcaatgatcgat |
303 |
Q |
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| T |
7450243 |
aaaataaaaagtagaaggaaggagcgggtgagaaatcctgaaggttatcttcggatcaaagaacacctgagagattaaacctagctaggcaatgatcgat |
7450342 |
T |
|
| Q |
304 |
cttctttggtcccaagattccatttccacttccctcccttggacacatgtcccatattttatgcctatcacatgtcttattaattttgtaacatacattg |
403 |
Q |
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| T |
7450343 |
tttctttggtcccaagattccatttccacttccctcccatggacacatgtcccatattttatgcctatcacatgtcttat---ttttgtaacatacattg |
7450439 |
T |
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| Q |
404 |
tctttaattagtactcgatttgtacccaatgctattatcaaatttattagttttcatctctagattgagaaccc |
477 |
Q |
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| T |
7450440 |
tctttaattagtactcgatttgtacccaatgttattatcaaaattattagtttttatctctagattgagaaccc |
7450513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 528 - 831
Target Start/End: Original strand, 7450564 - 7450879
Alignment:
| Q |
528 |
tcagtggcatgcatgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaa---------- |
617 |
Q |
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| T |
7450564 |
tcagtggcatgcatgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaaaaattaatta |
7450663 |
T |
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| Q |
618 |
--tcaagtagcaagaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatgggcaataattaattc |
715 |
Q |
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| T |
7450664 |
aatcaagtagcaagaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatggggaataattaattc |
7450763 |
T |
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| Q |
716 |
aaccttttgatgaaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagct |
815 |
Q |
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| T |
7450764 |
aaccttttgatgaaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagct |
7450863 |
T |
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| Q |
816 |
actagtacttgtgtat |
831 |
Q |
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| T |
7450864 |
actagtacttgtgtat |
7450879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 7436198 - 7436325
Alignment:
| Q |
256 |
ggatcaaagaacacctgagagattaaac---ctagctaggcaatgatcgatcttctttggtcccaagattccatttccacttcc-ctccct---tggaca |
348 |
Q |
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| T |
7436198 |
ggatcaaaggacacctgagggatgaatctagctagctaggcaatgatc----ttctttggtcccaagattccatttccatatctacttgatcaatggaca |
7436293 |
T |
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| Q |
349 |
catgtcccatattttatgcctatcacatgtct |
380 |
Q |
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| T |
7436294 |
catgtcacatattttatgcctatcacatgtct |
7436325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 759
Target Start/End: Original strand, 7436755 - 7436794
Alignment:
| Q |
720 |
ttttgatgaaagggactagcttaggctttgtcttccaatg |
759 |
Q |
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| T |
7436755 |
tttttatgaaagggactagctttggctttgtcttccaatg |
7436794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3982885 - 3982938
Alignment:
| Q |
1 |
ttcaggcgatgcaccttagtctgatggacgttcgatccacgtgtcaatgttgga |
54 |
Q |
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| T |
3982885 |
ttcaggcgatgtaccttagtttgatggacgtttggtccacatgtcaacgttgga |
3982938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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