View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_31 (Length: 321)
Name: NF1098_low_31
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 43895418 - 43895143
Alignment:
| Q |
9 |
gataatactaatgagggccttcgcggcattaatttatcgaggattaggtatcactgttcttagagacacacctgctcttgccttatactttgggacatat |
108 |
Q |
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| T |
43895418 |
gataacactaattagggccttcgcggcattaatttatcgaggatttggtatcactgttcttagagacacacctgctcttgccttatactttgggacatat |
43895319 |
T |
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| Q |
109 |
atgagtacactagg-agaaacttcaccctggttgcagagaaagttgtgaagaaagtgtgtcagtactatgtttgtagcaggggatagcaagttggctttt |
207 |
Q |
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| T |
43895318 |
atgagtacactagggagaaacttcaccctggttgcagagaaagttgtgaagaaagtgtgtgagtgctatgtttgtagcaggggatagcaagttggctttt |
43895219 |
T |
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| Q |
208 |
caactaccctacagatgttataaagacaagattacaagctcaaacatcttcttcattgaaatacaaaggcatcttg |
283 |
Q |
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| T |
43895218 |
caactaccctacagatgttataaagacaagattacaagctcaaacatcttcttcattgaaatacaaaggcatcttg |
43895143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 43892299 - 43892048
Alignment:
| Q |
40 |
atttatcgaggattaggtatcactgttcttagagacacacctgctcttgccttatactttgggacatatatgagtacactag-gagaaacttcaccctgg |
138 |
Q |
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| T |
43892299 |
atttatcgaggatttggcatcactgttcttagagatgcacctgctcttgccttatattttggaacatat--gagtacacaagagagaaacttcatcctgg |
43892202 |
T |
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| Q |
139 |
ttgcagagaaagttgtgaagaaagtgtgtcagtactatgtttgtagcagggg-----------atagcaagttggcttttcaactaccctacagatgtta |
227 |
Q |
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| T |
43892201 |
ttgtagagaaagttgtcaagaaagtgtg--agtactatgtttatagcagggggattggcagggatagctagttggcttttcaactaccctacagatgtta |
43892104 |
T |
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| Q |
228 |
taaagacaagattacaagctcaaacatcttcttcattgaaatacaaaggcatcttg |
283 |
Q |
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| T |
43892103 |
taaagacaagattacaagctcaaacatcttcttcattgaaatacaaaggcatcttg |
43892048 |
T |
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