View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_37 (Length: 283)

Name: NF1098_low_37
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_37
NF1098_low_37
[»] chr2 (8 HSPs)
chr2 (15-283)||(44614255-44614523)
chr2 (124-283)||(44623510-44623669)
chr2 (59-196)||(39601814-39601951)
chr2 (15-192)||(39160869-39161046)
chr2 (15-192)||(39208148-39208325)
chr2 (107-194)||(39214733-39214820)
chr2 (233-276)||(39136281-39136324)
chr2 (59-120)||(39199652-39199713)
[»] chr8 (2 HSPs)
chr8 (208-283)||(44951404-44951476)
chr8 (19-92)||(44951527-44951600)
[»] chr7 (1 HSPs)
chr7 (233-276)||(19806642-19806685)
[»] chr5 (1 HSPs)
chr5 (235-275)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 44614255 - 44614523
Alignment:
Q  15 actgccagttaagaggttatttgatagcaacaattccatggacttttctgttaagagatcaaaggtatcactatatgatgatcgtgacaaatatgaagat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44614255 actgccagttaagaggttatttgatagcaacaattccatggacttttctgttaagagatcaaaggtatcactatatgatgatcgtgacaaagatgaagat 44614354  T
Q  115 gatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttnnnnnnntcatttg 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  44614355 gatattccttcgttgaatataaataaaaggtcaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttaaaaaaatcatttg 44614454  T
Q  215 aggaatgcaatggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgct 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44614455 aggaatgcaatggacaaaaagtagaagagaggcaattgcggtctataaagagagatattgagaaatgct 44614523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 44623510 - 44623669
Alignment:
Q  124 tcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgcatcgttnnnnnnntcatttgaggaatgca 223  Q
    |||||||| |||||||||| |||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||       ||||| | ||||||||    
T  44623510 tcgttgaacataaataaaaagccaggaaaatcagctgataattcattttccatgctgaggaaagaacttgcatcgttaaaaaaatcattcgcggaatgca 44623609  T
Q  224 atggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgct 283  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44623610 acggacaacaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgct 44623669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 39601814 - 39601951
Alignment:
Q  59 tttctgttaagagatcaaaggtatcactatatgatgatcgtgacaaatatgaagatgatattccttcgttgaatataaataaaaggccaggcaaatcagc 158  Q
    |||||||||||| ||||||||| ||||||||| ||||||  |||||  |||||||||||||||||| |||| || ||| |||||||||| |||||||| |    
T  39601814 tttctgttaagaaatcaaaggtgtcactatatcatgatcacgacaatgatgaagatgatattcctttgttggatttaattaaaaggccaagcaaatcaac 39601913  T
Q  159 tgatatttcattttcctcgctgaggaaagaacttgcat 196  Q
    |||||  |||||||||||||||| |||||  |||||||    
T  39601914 tgataaatcattttcctcgctgaagaaaggccttgcat 39601951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 39160869 - 39161046
Alignment:
Q  15 actgccagttaagaggttatttgatagcaacaattccatggacttttctgttaagagatcaaaggtatcactatatgatgatcgtgacaaatatgaagat 114  Q
    |||||||||||||||| | ||||| | || ||||||| ||||  |||||||||||| ||||||||  || |  ||||||||||  |  ||| ||| ||||    
T  39160869 actgccagttaagaggctgtttgagaacagcaattccttggatgtttctgttaagaaatcaaaggcgtcgccgtatgatgatcagggaaaagatggagat 39160968  T
Q  115 gatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaactt 192  Q
    | ||||||  ||   | || || ||||| |||| ||||||||||||||   |||||||||||||||| ||||||||||    
T  39160969 ggtattccgccgacaagtacaactaaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaactt 39161046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 39208325 - 39208148
Alignment:
Q  15 actgccagttaagaggttatttgatagcaacaattccatggacttttctgttaagagatcaaaggtatcactatatgatgatcgtgacaaatatgaagat 114  Q
    |||||||||||||||| | ||||| | || ||||||| ||||  |||||||||||| ||||||||  || |  ||||||||||  |  ||| ||| ||||    
T  39208325 actgccagttaagaggctgtttgagaacagcaattccttggatgtttctgttaagaaatcaaaggcgtcgccgtatgatgatcagggaaaagatggagat 39208226  T
Q  115 gatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaactt 192  Q
    | ||||||  ||   | || || ||||| |||| ||||||||||||||   |||||||||||||||| ||||||||||    
T  39208225 ggtattccgccgacaagtacaactaaaaagccaagcaaatcagctgatgaatcattttcctcgctgatgaaagaactt 39208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 39214733 - 39214820
Alignment:
Q  107 atgaagatgatattccttcgttgaatataaataaaaggccaggcaaatcagctgatatttcattttcctcgctgaggaaagaacttgc 194  Q
    ||||||||||||||| || || | || ||| ||||||||||||||||||| |  |||  |||||||||||||||| |||||| |||||    
T  39214733 atgaagatgatattcttttgtcggatttaattaaaaggccaggcaaatcaacccataaatcattttcctcgctgaagaaagaccttgc 39214820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 39136281 - 39136324
Alignment:
Q  233 aagtagaagagaggcgattgcggtctataaagagagatattgag 276  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||    
T  39136281 aagtagaagagaggagattgcagtccataaagagagatattgag 39136324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 39199713 - 39199652
Alignment:
Q  59 tttctgttaagagatcaaaggtatcactatatgatgatcgtgacaaatatgaagatgatatt 120  Q
    |||||||||||| ||||||||| |||| |||| |||||| ||||||| ||| |||| |||||    
T  39199713 tttctgttaagaaatcaaaggtgtcaccatatcatgatcatgacaaagatggagataatatt 39199652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 44951476 - 44951404
Alignment:
Q  208 tcatttgaggaatgcaatggacaaaaagtagaagagaggcgattgcggtctataaagagagatattgagaaatgct 283  Q
    ||||||||||||||||| || |||   ||||||||||||| ||||||| | ||||||||||||||| |||| ||||    
T  44951476 tcatttgaggaatgcaacgggcaa---gtagaagagaggcaattgcggccgataaagagagatattaagaagtgct 44951404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44951600 - 44951527
Alignment:
Q  19 ccagttaagaggttatttgatagcaacaattccatggacttttctgttaagagatcaaaggtatcactatatga 92  Q
    |||||||||||| ||||||||| || ||||||| ||  | |||||||||||| ||||||| | |||| ||||||    
T  44951600 ccagttaagaggctatttgataacagcaattccttgatcatttctgttaagaaatcaaagatgtcaccatatga 44951527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 19806642 - 19806685
Alignment:
Q  233 aagtagaagagaggcgattgcggtctataaagagagatattgag 276  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||    
T  19806642 aagtagaagagaggagattgcagtccataaagagagatattgag 19806685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 17058843 - 17058883
Alignment:
Q  235 gtagaagagaggcgattgcggtctataaagagagatattga 275  Q
    |||||||| | |||||||| |||||||||||||||||||||    
T  17058843 gtagaagaaaagcgattgcagtctataaagagagatattga 17058883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University