View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1098_low_40 (Length: 279)

Name: NF1098_low_40
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1098_low_40
NF1098_low_40
[»] chr1 (5 HSPs)
chr1 (57-241)||(32894755-32894938)
chr1 (189-241)||(32950383-32950435)
chr1 (197-241)||(32884010-32884054)
chr1 (189-237)||(32934410-32934458)
chr1 (197-241)||(32918372-32918416)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 32894755 - 32894938
Alignment:
Q  57 accttgtatctttttatggaaatttttctcctttcagcgttcgggtaagaacaaaaagattatgctattacactgtctgtatataaataaggaaacataa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32894755 accttgtatctttttatggaaatttttctcctttcagcgttcgggtaagaacaaaaagattatgctattacactgtctgtatataa-taaggaaacataa 32894853  T
Q  157 tttgtttaattttcaaaatttttgtaggttctgtttgtctctcaatttgtactttgcaagcttgaagtatacttctccaaccttt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32894854 tttgtttaattttcaaaatttttgtaggttctgtttgtctctcaatttgtactttgcaagcttgaagtatacttctccaaccttt 32894938  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 32950383 - 32950435
Alignment:
Q  189 gtttgtctctcaatttgtactttgcaagcttgaagtatacttctccaaccttt 241  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  32950383 gtttgtctatcaatttgtactttgcaagcctgaagtatacttctccaaccttt 32950435  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 32884010 - 32884054
Alignment:
Q  197 ctcaatttgtactttgcaagcttgaagtatacttctccaaccttt 241  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  32884010 ctcaatttgtactttgcaagcttaaagtatacttctccaaccttt 32884054  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 32934410 - 32934458
Alignment:
Q  189 gtttgtctctcaatttgtactttgcaagcttgaagtatacttctccaac 237  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  32934410 gtttgtctatcaatttgtactttgcaagcttaaagtatacttctccaac 32934458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 32918372 - 32918416
Alignment:
Q  197 ctcaatttgtactttgcaagcttgaagtatacttctccaaccttt 241  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  32918372 ctcaatttgtattttgcaagcttaaagtatacttctccaaccttt 32918416  T

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