View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1098_low_41 (Length: 277)
Name: NF1098_low_41
Description: NF1098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1098_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 35262953 - 35263124
Alignment:
| Q |
34 |
attattctgccaaccaagaca----accccttttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagag |
129 |
Q |
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| T |
35262953 |
attattctgccaaccaagacacaagacccctt--gcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagag |
35263050 |
T |
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| Q |
130 |
accactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcctaaactga |
203 |
Q |
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| T |
35263051 |
accactcttccaattaccagcctttatctctaacaaattcatctggacttcttcattttctatgcctgaactga |
35263124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 35270406 - 35270542
Alignment:
| Q |
62 |
ttgcatagtatagtaaatgctgcttaattgtgttat--ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctc |
159 |
Q |
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| T |
35270406 |
ttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttccaattaccaccctttgtctg |
35270505 |
T |
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| Q |
160 |
caacaaattcatctggacttcttcattttctatgcct |
196 |
Q |
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| T |
35270506 |
tatcacattcatctggacttcttcattttctatgcct |
35270542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 35276531 - 35276631
Alignment:
| Q |
81 |
ctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttc |
180 |
Q |
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| T |
35276531 |
ctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagagaccactcttcca---accaccctttatctccatcacattcatctgaacttc |
35276627 |
T |
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| Q |
181 |
ttca |
184 |
Q |
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|||| |
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| T |
35276628 |
ttca |
35276631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 35147351 - 35147419
Alignment:
| Q |
77 |
aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatta |
145 |
Q |
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| T |
35147351 |
aatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta |
35147419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 35199926 - 35199987
Alignment:
| Q |
84 |
cttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatta |
145 |
Q |
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| T |
35199926 |
cttaattgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaatta |
35199987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 35190359 - 35190427
Alignment:
| Q |
77 |
aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatta |
145 |
Q |
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| T |
35190359 |
aatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaatta |
35190427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 35224921 - 35225019
Alignment:
| Q |
98 |
ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcct |
196 |
Q |
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| T |
35224921 |
ttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcct |
35225019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 35219069 - 35219114
Alignment:
| Q |
98 |
ttaggcctaatttctattccttcaagaaagagaccactcttccaat |
143 |
Q |
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| T |
35219069 |
ttaggcctaacttctattccttcaacaaagaaacctctcttccaat |
35219114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 35248242 - 35248311
Alignment:
| Q |
62 |
ttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagac |
131 |
Q |
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| T |
35248242 |
ttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttctattccttcaaataagagac |
35248311 |
T |
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